Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq30 87.8 2e-12 seq38 86.0 7e-12 >seq30 Length=610381 Score = 87.8 bits (96), Expect = 2e-12 Identities = 182/271 (67%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 168444 GTGAAAATGTACCTCGTCTGAGAAGCATCCTTACCACCCATGAGACGCGTACCAAATTGA 168503 ||||| ||||| | || || || ||||| || ||||| ||||| || |||||||| Sbjct 127714 GTGAAGATGTAACGCGCACTAGCGGCGTCCTTGCCGCCCATCAGACGGGTGCCAAATTGG 127773 Query 168504 CCACACGGTTCAAGAAGGTTAATGTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACA 168563 || ||| || |||||||||||||| || | ||| || ||||| || ||| Sbjct 127774 CCGATCGGCATCAGCAGGTTAATGTTGTTGCTTCCGACGAAGTTGTGCGCCAAATTGACA 127833 Query 168564 ATCGTGTCCGCTAAGGATACTTCACCATGGTGGTACGCAGACTTGTCCGCGACATATGCC 168623 ||||| | || | ||||| || || ||||| || ||| | || || | | | Sbjct 127834 ATCGTTGACATTAGGCTCACTTCGCCGTGATGGTATGCGGACATCTCGGCAATCGAGCCG 127893 Query 168624 GCCAGTTGTGCCACCTTCATTTCATCCTTGAGATTCTTATGGAAGCAAGCATACATCACT 168683 ||||| || || ||||||| ||| |||| ||| | |||||| | ||| ||| Sbjct 127894 GCCAGCTGGGCAACCTTCACTTCGCGCTTGTCATTTCGCTTGAAGCAGGTGAACAGCACC 127953 Query 168684 TTCCTCTGTGAAGGCTTGAGACCATCCGCCA 168714 |||| |||| ||||| | ||| ||| ||| Sbjct 127954 TTCCGCTGTCCCGGCTTCAAACCGTCCACCA 127984 >seq38 Length=545037 Score = 86.0 bits (94), Expect = 7e-12 Identities = 186/276 (67%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 168436 TAAGTTTTGTGAAAATGTACCTCGTCTGAGAAGCATCCTTACCACCCATGAGACGCGTAC 168495 |||| ||||||||||||| || | || ||||||||| |||||| || || |||| Sbjct 422436 TAAGCATTGTGAAAATGTATCTTGCACTAGCAGCATCCTTGCCACCCTGCAGGCGAGTAC 422495 Query 168496 CAAATTGACCACACGGTTCAAGAAGGTTAATGTTGTTTGAACCCGTGTAGTCGTTTGCCA 168555 |||| || ||| ||| || | || || ||||| || |||| | ||||| Sbjct 422496 CAAACTGGCCAATAGGTAACAGTAAATTGATATTGTTGCTGCCAACAAAGTCATGTGCCA 422555 Query 168556 ACTTAACAATCGTGTCCGCTAAGG-ATACTTCACCATGGTGGTACGCAGACTTGTCCGCG 168614 | |||| ||| || ||| ||||| | |||| |||||||| ||||| ||| | || || Sbjct 422556 AATTAATAATAGT-TCCCATAAGGCTTGCTTCCCCATGGTGATACGCTGACATTTCAGCA 422614 Query 168615 ACATATGCCGCCAGTTGTGCCACCTTCATTTCATCCTTGAGATTCTTATGGAAGCAAGCA 168674 || | | |||| || || ||||||| ||| |||| ||| | ||| || | Sbjct 422615 ACGGAACCGGCCAACTGGGCTACCTTCACTTCTCGCTTGTCATTACGCTTGAAACAGGTG 422674 Query 168675 TACATCACTTTCCTCTGTGAAGGCTTGAGACCATCC 168710 ||| ||||| | ||| || || ||||||||| Sbjct 422675 AACAGTACTTTTCGTTGTCCCGGTTTTAGACCATCC 422710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589968388278920