Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq177 152 4e-31 >seq177 Length=111185 Score = 152 bits (168), Expect = 4e-31 Identities = 395/592 (67%), Gaps = 20/592 (3%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| | || || ||||| || || || || ||||| ||||| || | || |||| || Sbjct 79257 GCTGTTGGCATTGATTTGGGTACGACGTACAGTTGCGTTGGAGTGTTCCAGCATGGCAAG 79316 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || ||||| ||||| ||||| || ||| | ||||| || || || |||||||| Sbjct 79317 GTAGAGATTATCGCCAACGATCAGGGCAACCGCACTACGCCCAGCTACGTGGCTTTCACG 79376 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | | || |||||||| || | || | | | ||||| ||| Sbjct 79377 GATACGGAGCGACTGATCGGAGATGCAGCCAAGAACCAGGTCGCCTTGAATCCGCATAAT 79436 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || |||| || || || || || || || | ||| |||| ||| | |||||| | Sbjct 79437 ACCGTTTTCGACGCGAAGCGCTTGATCGGTCGGCGTTACGATGACTCGGCCGTTCAGTCG 79496 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-C 550290 || |||||||||||||| ||| | | || | | | ||||||| || | || ||| Sbjct 79497 GACATGAAGCATTGGCCGTTCAAGGTGGTCAGCGATGCTGGAAAGCCGAAAATCCAAGTG 79556 Query 550291 TACT-CATGAAGGATCTGTTAAACA--ATTTTCA--CCAGAACAAATTTCATCTATGGTT 550345 | | || | || ||||| || |||| || || |||| ||||||| Sbjct 79557 GAGTACAAGGGCGA------AAACAAGATGTTCACGCCCGAGGAAATCAGCGCTATGGTG 79610 Query 550346 TTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAA-GAAGTTACGGATGCAGT 550404 || | || |||||| | || ||| | | || |||| ||| | || | |||||| || Sbjct 79611 TTGGTTAAGATGAAAGAGACGGCC-GAGGCTTACTTGGGCAAGGCGGTGAAGGATGCCGT 79669 Query 550405 AATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACG 550464 || || || || || || || || || || ||| | || || || || || || || Sbjct 79670 GATTACCGTTCCGGCGTACTTCAACGATTCTCAAAGGCAGGCAACAAAGGACGCAGGTAC 79729 Query 550465 TATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATA 550524 ||| |||| || |||||||| || |||||||||||||| || ||||| || | || || Sbjct 79730 TATATCTGGCCTAAATGTTCTGCGCATTATCAATGAACCGACGGCTGCCGCTATCGCCTA 79789 Query 550525 TGGACTTGATAAACATAATGAT-CA--AGAACTTAATGTACTCATCTTTGAT 550573 |||| | || ||| || | | || ||| | |||||||| ||||| ||| Sbjct 79790 TGGATTAGACAAA---AAGGGTACAGGAGAGCGGAATGTACTGATCTTCGAT 79838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029206995369670