Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq62 131 1e-25 >seq62 Length=382019 Score = 131 bits (144), Expect = 1e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| |||||||| || ||||||||||| ||||| ||||| ||||| || || ||||| Sbjct 283800 CTTACCAGCAAATATTAACCGCTGTTGATCCGGCGGGATGCCCTCTTTGTCCTGTATTTT 283859 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| |||| | |||||| |||| ||||||||| || |||| ||||| || || Sbjct 283860 AGTTTTCACATTTTCAATAGTGTCGGACGGTTCCACTTCGAGCGTGATTGTTTTTCCAGT 283919 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | ||||| |||||||| |||||| Sbjct 283920 GAGCGTTTTAACAAATATTTGCATG 283944 Score = 113 bits (124), Expect = 4e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| || |||||||| || || || ||||| || ||||| ||||| ||||| Sbjct 282392 TACCGGCAAAAATTAAACGCTGCTGGTCAGGAGGAATTCCCTCTTTGTCTTGTATTTTCG 282451 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| | || | ||||| |||| ||||||||||| || | |||||| || || | Sbjct 282452 TTTTCACATTATCGATTGTGTCCGACGGCTCCACTTCAAGGGTAATCGTTTTACCAGTCA 282511 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 | || || |||||||||||||| Sbjct 282512 ACGTCTTCACAAATATCTGCAT 282533 Score = 109 bits (120), Expect = 4e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| || || ||||| ||||| || || |||||||| || ||||||||||| Sbjct 282954 TACCGGCAAAAATTAAGCGCTGCTGATCTGGTGGTATGCCTTCCTTGTCTTGAATTTTAG 283013 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| || | || | || || |||| ||| || || | ||||| ||| || ||||||| Sbjct 283014 CTTTCACGTTCTCAATCGTATCTGACGGTTCGACCTCCAAAGTGATCGTCTTCCCGGTTA 283073 Query 101448 AAGTTTTTACAAATATCTGCATG 101470 ||||||| || ||||| |||||| Sbjct 283074 AAGTTTTGACGAATATTTGCATG 283096 Score = 105 bits (116), Expect = 5e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| || || || | ||||||||||||||| ||||| || || ||||||||||| || Sbjct 284652 TACCAGCGAAGATTAGACGCTGTTGATCGGGTGGAATTCCCTCCTTATCTTGAATCTTCG 284711 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 || || | || | |||||| || | || || || || || | || |||||||||| Sbjct 284712 TCTTCACGTTATCAATAGTGTCGGAAGGCTCAACCTCCAGCGTAATAGTCTTGCCGGTTA 284771 Query 101448 AAGTTTTTACAAATATCTGCATG 101470 | ||||||||||| ||||||||| Sbjct 284772 ATGTTTTTACAAAGATCTGCATG 284794 Score = 102 bits (112), Expect = 6e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||| || | |||| ||||| || ||||||||||||||||| || ||||||||||| Sbjct 285218 CTAACCAGCGTAAATCAGGCGCTGCTGGTCGGGCGGAATGCCTTCCTTGTCTTGAATTTT 285277 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || || |||| | | ||| |||| || ||||| || |||| |||||| || || Sbjct 285278 GTTCTTCACGTTTTCAATCGAGTCCGACGGCTCGACTTCGAGCGTGATCGTTTTTCCCGT 285337 Query 101446 TAAAGTTTTTACAAATATCTGCATGG 101471 | ||||| || || |||||||||| Sbjct 285338 GAGTGTTTTCACGAAAATCTGCATGG 285363 Score = 100 bits (110), Expect = 2e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||| ||||| |||| ||||| || || ||||| ||||||||||| || |||||||| Sbjct 284930 CTCACCAGCAAAGATCAGTCGCTGCTGGTCAGGCGGTATGCCTTCTTTGTCCTGAATTTT 284989 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || | || || ||||| |||| |||||| || | ||| | |||||| || || Sbjct 284990 AGCCTTCACGTTCTCCACCGTGTCCGACGGTTCCACCTCCAAAGTTATCGTTTTTCCCGT 285049 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 || || || || || ||||||||| Sbjct 285050 CAACGTCTTCACGAAAATCTGCATG 285074 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| || ||||| || || || || |||||||| || || ||||||||||| Sbjct 283515 TACCGGCAAAAATTAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGAATTTTCG 283574 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 || ||| |||| | || || || | |||||||| || || | || || ||||| | Sbjct 283575 TCTTCACATTTTCAATGGTATCCGAAGGCTCCACTTCCAGTGTTATTGTCTTACCGGTCA 283634 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 | ||||| ||||| |||||||| Sbjct 283635 ACGTTTTCACAAAGATCTGCAT 283656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396270271710831