Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq92 91.5 2e-13 >seq92 Length=287114 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 197080 TCGGGATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCG 197139 ||||||| ||| || ||||| | || | ||||| || || | ||| ||| || Sbjct 169663 TCGGGATCGTAGCAAGCGAGCAGATAACCTCCGTAAACGCCAGTCCGCTTGCCCGTGCCA 169722 Query 197140 TTGAAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTC 197199 | |||| || | || |||| ||| || || |||| || | || || || |||||| Sbjct 169723 AGGTAGCCACCCAGTACTACCAAATCAAGCGTATCGCCGACGGCGTCGATATAGTCTTTC 169782 Query 197200 TTCAGTTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGG 197259 |||||||||||||| || || | ||||||||| ||||| || || | |||||| Sbjct 169783 TTCAGTTTGAGCCAACTGTGCGAACGCTTGGCAATGTCGTACGTGGCCCCTTCGTCCAAC 169842 Query 197260 GTCTTGATCATCAATCCCTCGCA 197282 ||||| | ||| |||||||| || Sbjct 169843 GTCTTCACCATTAATCCCTCACA 169865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676715363301040