Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq55 113 3e-20 seq62 96.9 3e-15 >seq55 Length=397027 Score = 113 bits (124), Expect = 3e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126 ||||| | |||| ||| || || | ||||| || | || ||| | |||||| |||| Sbjct 197367 GGATACACTATTTTTTCGCAGATAAGCTGAGCTATGCGATCACCCCTTTTCACG-CAAAA 197309 Query 9127 TCTGTGTCGGA-ATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGAT 9185 | ||| | | | ||||||| || || || ||||| ||||||||||| ||||||| Sbjct 197308 TTTGTCTTTTCCAAGGTTGAACAATACAACGCCGACGTTTCCCCTGTAATCGCCATCGAT 197249 Query 9186 CACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCG 9245 ||| ||||| || ||||||||| ||||| ||||| || || ||||| ||||| | || Sbjct 197248 CACGCCAGCTCCTACGTCGATGCCATGCTTAACCGCAAGGCCCGAGCGCGGCGCTACACG 197189 Query 9246 ACCGTAGCATCCCACCGGTAA 9266 |||||||| ||| ||||| Sbjct 197188 GCCGTAGCAACCCTTGGGTAA 197168 >seq62 Length=382019 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 48621 TGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATC 48680 |||||||| ||||| ||||| |||||||| |||| |||| ||||||||||| |||| Sbjct 283228 TGCTTACCAGCAAAGATCAGCCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATC 283287 Query 48681 TTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCC 48740 || || || | | | || |||| ||||| || | ||| |||||||| || Sbjct 283288 TTCGTCTTCACGTTTTCGATCGTATCGGACGGTTCCACTTCGAGCGTGATCGTTTTCCCG 283347 Query 48741 GTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| |||||| |||||||||||||| Sbjct 283348 GTCAGAGTTTTCACAAAAATCTGCAT 283373 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 || ||| ||||| ||||||||||| || || | || | ||| || ||||| ||| || Sbjct 284930 CTCACCAGCAAAGATCAGTCGCTGCTGGTCAGGCGGTATGCCTTCTTTGTCCTGAATTTT 284989 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || || |||| | || |||| |||||||||| || |||||||||||||| Sbjct 284990 AGCCTTCACGTTCTCCACCGTGTCCGACGGTTCCACCTCCAAAGTTATCGTTTTTCCCGT 285049 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || || ||||||||||| Sbjct 285050 CAACGTCTTCACGAAAATCTGCAT 285073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380929786374609