Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq69 109 1e-18 >seq69 Length=365491 Score = 109 bits (120), Expect = 1e-18 Identities = 233/347 (67%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||||||| |||||| ||||| ||| || || ||||||| || | || || Sbjct 156886 TCGTCCCGGGATATGAGCTCGTTGCTGAACGTCAGGCCGGGCATGAGGCCGCGCTTCTTT 156945 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 |||||||| || | || ||| || |||||||| |||||||| || || || ||||| Sbjct 156946 AGCCAGAATATCGAGGCAAAACTTCCCGAGAAGAATATGCCCTCGACGGCAGCAAACGCC 157005 Query 48275 GTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCC 48334 || | || | ||| | | || ||| | |||||| || |||||||| ||| Sbjct 157006 ACCAGTCGGTCGCTGAACGGCGACCGCTGGTCGGCGATCCAACGCAGAGCCCAGTCGGCC 157065 Query 48335 TTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCG 48394 |||||||||| ||| || || ||||| ||||| ||| || | |||| || | || Sbjct 157066 TTCTTCTTGACGCACGGAATGGTCTCAATGGCGTTGAACAGATGGTTGCGCTGCTCGTCG 157125 Query 48395 TCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATA 48451 || | || || | | ||||| | |||||| || ||||| | ||||| || Sbjct 157126 TCTTGTATGTAAGTGTCAATCAGCAGGCT---GTACATTTCCGAGTGGATGTTCTCGATG 157182 Query 48452 GCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTC 48498 || || || || ||||| ||| | ||||| | |||||||||| Sbjct 157183 GCTATTTGAAAGCCGTAAAAGCAGCGAGCCTCGGTCGCCTGCACTTC 157229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931513202878720