Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq69 100 5e-16 >seq69 Length=365491 Score = 100 bits (110), Expect = 5e-16 Identities = 218/325 (67%), Gaps = 6/325 (2%) Strand=Plus/Minus Query 25687 TGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTT 25746 || || ||||| || || || |||||||| || | ||||| || |||| || || Sbjct 157205 TGCTTTTACGGCTTTCAAATAGCCATCGAGAACATCCACTCGGAAATGTA---CAGCCTG 157149 Query 25747 CTGATG---ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAG 25803 ||||| || ||||| ||||| || || | | | ||||| ||||| ||| Sbjct 157148 CTGATTGACACTTACATACAAGACGACGAGCAGCGCAACCATCTGTTCAACGCCATTGAG 157089 Query 25804 CACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC 25863 ||| || || |||||| |||||| ||||| || |||||| | |||| | Sbjct 157088 ACCATTCCGTGCGTCAAGAAGAAGGCCGACTGGGCTCTGCGTTGGATCGCCGACCAGCGG 157029 Query 25864 GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGT 25923 | |||| |||| || ||||| || |||||||| || |||||||| || ||| || Sbjct 157028 TCGCCGTTCAGCGACCGACTGGTGGCGTTTGCTGCCGTCGAGGGCATATTCTTCTCGGGA 156969 Query 25924 TCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCC 25983 ||||| | || |||||||| ||| || || ||||||||| ||| || | Sbjct 156968 AGTTTTGCCTCGATATTCTGGCTAAAGAAGCGCGGCCTCATGCCCGGCCTGACGTTCAGC 156909 Query 25984 AACGAGCTCATCAGCAGGGACGAGG 26008 ||||||||||| | ||||||||| Sbjct 156908 AACGAGCTCATATCCCGGGACGAGG 156884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928825259427520