Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq30 87.8 2e-12 seq38 86.0 7e-12 seq21 84.2 3e-11 >seq30 Length=610381 Score = 87.8 bits (96), Expect = 2e-12 Identities = 182/271 (67%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 14358 TGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATC 14417 ||| ||| ||| | ||||| |||| |||| ||| ||| | |||||| | ||| Sbjct 127984 TGGTGGACGGTTTGAAGCCGGGACAGCGGAAGGTGCTGTTCACCTGCTTCAAGCGAAATG 127925 Query 14418 TCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACC 14477 |||| ||| ||||||| || || ||||| | | | || || | ||| || |||| Sbjct 127924 ACAAGCGCGAAGTGAAGGTTGCCCAGCTGGCCGGCTCGATTGCCGAGATGTCCGCATACC 127865 Query 14478 ACCATGGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTT 14537 | || || ||||| | || | |||||||| || ||||| || ||| | || Sbjct 127864 ATCACGGCGAAGTGAGCCTAATGTCAACGATTGTCAATTTGGCGCACAACTTCGTCGGAA 127805 Query 14538 CAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTA 14597 |||||||||||||| || ||| || |||||||| || ||||| ||||| || | Sbjct 127804 GCAACAACATTAACCTGCTGATGCCGATCGGCCAATTTGGCACCCGTCTGATGGGCGGCA 127745 Query 14598 AGGATGCTTCTCAGACGAGGTACATTTTCAC 14628 |||| || || || | ||||| ||||| Sbjct 127744 AGGACGCCGCTAGTGCGCGTTACATCTTCAC 127714 >seq38 Length=545037 Score = 86.0 bits (94), Expect = 7e-12 Identities = 186/276 (67%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 14362 GGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATCTCAA 14421 ||||||||| || || ||| | ||||| ||| | || ||| | ||| ||| Sbjct 422710 GGATGGTCTAAAACCGGGACAACGAAAAGTACTGTTCACCTGTTTCAAGCGTAATGACAA 422651 Query 14422 GGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCA 14481 | ||| ||||||| || || |||| | | || || || | ||| ||||| ||||| Sbjct 422650 GCGAGAAGTGAAGGTAGCCCAGTTGGCCGGTTCCGTTGCTGAAATGTCAGCGTATCACCA 422591 Query 14482 TGGTGAAGTAT-CCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAA 14540 ||| |||| | ||||| ||| || ||| |||| |||||| | |||| || | Sbjct 422590 TGGGGAAGCAAGCCTTATGGGA-ACTATTATTAATTTGGCACATGACTTTGTTGGCAGCA 422532 Query 14541 ACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGG 14600 |||| || || | || ||| ||| || |||||||| || || |||||| |||| Sbjct 422531 ACAATATCAATTTACTGTTACCTATTGGCCAGTTTGGTACTCGCCTGCAGGGTGGCAAGG 422472 Query 14601 ATGCTTCTCAGACGAGGTACATTTTCACAAAACTTA 14636 ||||| || | || ||||||||||||| |||| Sbjct 422471 ATGCTGCTAGTGCAAGATACATTTTCACAATGCTTA 422436 >seq21 Length=749496 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 76192 GTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTAT 76251 ||| ||||||||||| | || || || | || || || || |||||||| | ||||| Sbjct 55472 GTCCAATATGCGACATCGTCCCATAGGCATTGGAGTGCAGGGGCTCGCGGACGCTTTTAT 55413 Query 76252 TTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGA 76311 ||| ||||| | || || || | ||||| || | ||| || ||| || || Sbjct 55412 TTTAATGCGCTATCCGTTCGAGTCTGCAGAAGCATTCAAGCTCAATCGTCATATTTTCGA 55353 Query 76312 AACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTA 76371 |||||| || || || | |||| ||||| || || ||||| | | | || |||| Sbjct 55352 AACCATTTACCATGCCGCATTGGAAGCGAGCTGCGAGTTGGCCAAGGACTTGGGACCCTA 55293 Query 76372 TGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG 76427 || ||| | ||||| || |||| | ||||| | | |||| ||||||||||| Sbjct 55292 TGCGACGTACGAGGGATCACCCGTTAGCAAAGGGATATTGCAGTATGATATGTGGG 55237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596557049667040