Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq177 392 4e-104 seq62 125 9e-24 seq55 91.5 2e-13 >seq177 Length=111185 Score = 392 bits (434), Expect = 4e-104 Identities = 892/1333 (67%), Gaps = 13/1333 (1%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 ||| |||| || ||||| || || || ||| || ||||| || | || ||| Sbjct 79257 GCTGTTGGCATTGATTTGGGTACGACGTACAGTTGCGTTGGAGTGTTCCAGCATGGCAAG 79316 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 |||||||||||| | || || || || ||||| || || || ||||| || || || Sbjct 79317 GTAGAGATTATCGCCAACGATCAGGGCAACCGCACTACGCCCAGCTACGTGGCTTTCACG 79376 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || || | |||||||| || || || ||| || |||| || ||| Sbjct 79377 GATACGGAGCGACTGATCGGAGATGCAGCCAAGAACCAGGTCGCCTTGAATCCGCATAAT 79436 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAA---GAAAGTCCAA 195535 || || || ||||||||||| | || ||||| | || ||| | | || || Sbjct 79437 ACCGTTTTCGACGCGAAGCGCTTGATCGGTCG---GCGTTACGATGACTCGGCCGTTCAG 79493 Query 195536 GACGATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATT 195595 || || ||| | ||| | | | ||| || || | | |||| ||||| | || Sbjct 79494 TCGGACATGAAGCATTGGCCGT-TCAAGGTGGTCA--GCGATGCTGGAAAGCCGAAAATC 79550 Query 195596 AATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTG 195655 | || || | | || || || || || | ||||| ||||| |||||||| Sbjct 79551 CAAGTGGAGTACAAGGGCGAAAACAAGATGTTCACGCCCGAGGAAATCAGCGCTATGGTG 79610 Query 195656 TTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTT 195715 ||| |||||||||| ||||| || || ||| | |||| || | ||||| ||||| || Sbjct 79611 TTGGTTAAGATGAAAGAGACGGCCGAGGCTTACTTGGGCAAGGCGGTGAAGGATGCCGTG 79670 Query 195716 GTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCT 195775 | || || || || ||||||| ||||| ||| | ||||| ||||||||||| | | || Sbjct 79671 ATTACCGTTCCGGCGTACTTCAACGATTCTCAAAGGCAGGCAACAAAGGACGCAGGTACT 79730 Query 195776 ATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 || | || ||||| ||| | |||||||||||||| || || || || || || ||| Sbjct 79731 ATATCTGGCCTAAATGTTCTGCGCATTATCAATGAACCGACGGCTGCCGCTATCGCCTAT 79790 Query 195836 GGTCTGGACAAGAACAAGGAC-GAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894 || | ||||| || | || | ||| |||||| ||||||| ||||| || || || Sbjct 79791 GGATTAGACAAAAAGG-GTACAGGAGAGCGGAATGTACTGATCTTCGATCTGGGCGGCGG 79849 Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954 ||| || ||||| ||| |||| | || || | ||||||||||||||| ||| | || || Sbjct 79850 TACTTTCGATGTGTCAATTCTGACAATCGAGGATGGTATATTCGAAGTGAAGTCCACCGC 79909 Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGA 196014 |||||||| || || || || || || ||||| || | || |||||| || Sbjct 79910 AGGTGATACGCACCTTGGCGGCGAGGACTTCGACAACCGCATGGTCACTCATTTCGTTGC 79969 Query 196015 TGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCT 196074 |||||| || || || ||||| || || || || |||||| | || | || || || Sbjct 79970 CGAGTTCAAACGCAAAAACAAGAAGGACATGTCGGGCAATCCTCGTGCCTTGCGACGTCT 80029 Query 196075 TAGGACTGCATGTGAACGTGCCAAACGAACTCTCT-CTTCTACGGCTCAAACAATGGTTG 196133 | || || || ||||| ||||| ||||| | | || || | ||| ||| ||| Sbjct 80030 GCGTACCGCTTGCGAACGCGCCAAGCGAACGTTGAGCAGCT-CGACACAAGCAAGTATTG 80088 Query 196134 AGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTG 196193 | || || |||| || || || |||| || || || ||||| ||||| || || | Sbjct 80089 AAATAGACAGTCTGTTCGAGGGCATCGACTATTACACGACGATTACTCGTGCCCGATTCG 80148 Query 196194 AAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTG 196253 | ||| | | | || ||||| | | |||| || ||||| || ||||| | Sbjct 80149 AGGAGCTTTGCGCCGACTTGTTCCGCTCGACCTTGGATCCCGTTGAGAAATCTCTTCGCG 80208 Query 196254 ACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTA 196313 |||| || | || || || ||||| | || |||| | || || ||||| || || | Sbjct 80209 ACGCCAAATTAGACAAATCCCAGGTTCACGACGTTGTATTGGTTGGCGGATCTACTCGCA 80268 Query 196314 TTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGA 196373 |||||||| | ||| || |||| ||||||||| || || || ||||| | | Sbjct 80269 TTCCGAAGGTGCAAAAGCTGCTGCAGGACTTCTTCAACGGGAAGGAATTGAACAAGAGCA 80328 Query 196374 TCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTG 196433 ||||||||||||| || || || || || || || || ||||| || ||| | || || | Sbjct 80329 TCAACCCGGATGAGGCGGTCGCCTACGGGGCTGCAGTCCAGGCGGCAATTTTGTCGGGCG 80388 Query 196434 TTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTC 196493 | | || | |||||||||| | |||| | || || | || | || ||||| Sbjct 80389 ATAAGCATGAGGCCGTCCAAGATTTGTTGCTTTTGGACGTGACTCCTCTTTCTCTGGGCA 80448 Query 196494 TTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTA 196553 | ||||| || ||||| ||||||||| | || | | ||||| || || ||||| | Sbjct 80449 TCGAAACCGCTGGTGGCGTTATGACTGCGTTGATCAAGCGCAACACTACCATACCGACGA 80508 Query 196554 AGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTAT 196613 | ||||| || | || ||||| || ||||| || ||||| |||||||| | Sbjct 80509 AAGTTTCTCAAGTGTTCACTACTTATTCGGACAATCAGCCGGGTGTGTTGATTCAAGTCT 80568 Query 196614 ATGAAGGAGAACG 196626 | ||||| || || Sbjct 80569 ACGAAGGCGAGCG 80581 >seq62 Length=382019 Score = 125 bits (138), Expect = 9e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| ||||| | || || || ||||| || || ||||||||| | || Sbjct 284793 ATGCAGATCTTTGTAAAAACATTAACCGGCAAGACTATTACGCTGGAGGTTGAGCCTTCC 284734 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || |||||| | || | ||||||||||||||||| || |||||||||||||| Sbjct 284733 GACACTATTGATAACGTGAAGACGAAGATTCAAGATAAGGAGGGAATTCCACCCGATCAA 284674 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || || || || ||||||| Sbjct 284673 CAGCGTCTAATCTTCGCTGGTA 284652 Score = 123 bits (136), Expect = 3e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||||||||| || |||||||| || ||||| || || || ||| | || Sbjct 282815 ATGCAAATATTTGTGAAAACTCTAACTGGAAAGACCATCACTCTGGAAGTGGAGCCTTCT 282756 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || |||| || ||||||||||| || || || || ||||| |||||| Sbjct 282755 GATACTATAGAGAATGTCAAGGCGAAGATTCAAGACAAAGAGGGTATCCCACCAGATCAG 282696 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || || | |||||||||||||| Sbjct 282695 CAGCGGTTGATTTTTGCTGGTAA 282673 Score = 120 bits (132), Expect = 4e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || |||||||| || || |||||||| ||||| ||||| || ||| |||| Sbjct 285361 ATGCAGATTTTCGTGAAAACACTCACGGGAAAAACGATCACGCTCGAAGTCGAGCCGTCG 285302 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| | || || ||| | || ||| |||||||| |||||||||||||| ||||| ||| Sbjct 285301 GACTCGATTGAAAACGTGAAGAACAAAATTCAAGACAAGGAAGGCATTCCGCCCGACCAG 285242 Query 171982 CAACGACTTATTTTTGCTGGT 172002 || || || |||| |||||| Sbjct 285241 CAGCGCCTGATTTACGCTGGT 285221 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| ||||| || || || ||||| || || || || || || | || Sbjct 284225 ATGCAAATATTTGTCAAAACTCTGACGGGCAAAACAATAACGCTAGAAGTGGAACCATCG 284166 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | || | || || ||||| ||||||||||| || || |||||| Sbjct 284165 GACACCATCGAAAACGTGAAGACAAAAATCCAAGACAAGGAAGGCATCCCGCCTGATCAG 284106 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || || ||||||||||| ||||| Sbjct 284105 CAGCGTCTTATTTTTGCGGGTAA 284083 Score = 113 bits (124), Expect = 6e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || ||||| | || || || || ||||| | ||||| || ||||| Sbjct 283095 ATGCAAATATTCGTCAAAACTTTAACCGGGAAGACGATCACTTTGGAGGTCGAACCGTCA 283036 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || ||| | ||||| || |||||||| ||||||||||| ||||| |||||| Sbjct 283035 GATACGATTGAGAACGTGAAAGCTAAAATTCAAGACAAGGAAGGCATACCACCAGATCAG 282976 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || | |||||||| |||| Sbjct 282975 CAGCGCTTAATTTTTGCCGGTA 282954 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| || || || ||||| ||||| ||||| || || |||| Sbjct 283373 ATGCAGATTTTTGTGAAAACTCTGACCGGGAAAACGATCACGCTCGAAGTGGAACCGTCC 283314 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| ||| | || | |||||||| || ||||| || ||||| || || || Sbjct 283313 GATACGATCGAAAACGTGAAGACGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAA 283254 Query 171982 CAACGACTTATTTTTGCTGGTAAACA 172007 || || || || ||||||||||| || Sbjct 283253 CAGCGGCTGATCTTTGCTGGTAAGCA 283228 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || |||||||| || | ||||| ||||| || ||||| || || ||| |||| Sbjct 282533 ATGCAGATATTTGTGAAGACGTTGACTGGTAAAACGATTACCCTTGAAGTGGAGCCGTCG 282474 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||||||||| | ||| | || || ||||| || || || ||||| || || ||| Sbjct 282473 GACACAATCGATAATGTGAAAACGAAAATACAAGACAAAGAGGGAATTCCTCCTGACCAG 282414 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || | |||||||| |||| Sbjct 282413 CAGCGTTTAATTTTTGCCGGTA 282392 Score = 105 bits (116), Expect = 9e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| ||||| || ||||||||||| ||||| ||||| || || |||| Sbjct 283943 ATGCAAATATTTGTTAAAACGCTCACTGGAAAAACAATCACGCTCGAAGTGGAACCGTCC 283884 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | ||| | || || || || || || ||||| || || ||||| Sbjct 283883 GACACTATTGAAAATGTGAAAACTAAAATACAGGACAAAGAGGGCATCCCGCCGGATCAA 283824 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || || | || ||||||||||| Sbjct 283823 CAGCGGTTAATATTTGCTGGTAA 283801 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || | || ||||||||||| || ||||| || || |||| Sbjct 284509 ATGCAAATATTTGTCAAGACGTTGACCGGAAAAACTATTACGCTCGAAGTGGAACCGTCC 284450 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | ||||| || || ||||| || || || |||||||| || ||| Sbjct 284449 GACACCATTGAGAATGTGAAAGCAAAAATCCAAGACAAAGAGGGTATTCCACCTGACCAG 284390 Query 171982 CAACGACTTATTTTTGCTGGTAAAC 172006 || || || || || || ||||||| Sbjct 284389 CAGCGTCTCATCTTCGCCGGTAAAC 284365 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||||||||| | || || || || || || || || || ||| | || Sbjct 283656 ATGCAGATCTTTGTGAAAACGTTGACCGGTAAGACAATAACACTGGAAGTGGAGCCTTCG 283597 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | || | || |||||||| ||||| |||||||| || || ||| Sbjct 283596 GATACCATTGAAAATGTGAAGACGAAAATTCAAGACAAGGAGGGCATTCCTCCTGACCAG 283537 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | |||||||| |||| Sbjct 283536 CAACGTTTAATTTTTGCCGGTA 283515 >seq55 Length=397027 Score = 91.5 bits (100), Expect = 2e-13 Identities = 75/90 (83%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||| ||||| || ||||| || ||||| |||||||||||||||||| | ||||||||||| Sbjct 87274 AGGTATTCCTCCTGATCAACAGCGACTGATTTTTGCTGGTAAACAGTTGGAAGATGGACG 87215 Query 172023 TACCCTCGCTGATTACAACGTTCA-AAAGG 172051 || || ||||||||||| | || ||||| Sbjct 87214 AACGCTGTCTGATTACAACATACAGAAAGG 87185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657848560219760