Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq62 122 2e-22 >seq62 Length=382019 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || ||||| ||||| | ||||||||| || || || || ||||| || |||||||| ||| Sbjct 283804 CCAGCAAATATTAACCGCTGTTGATCCGGCGGGATGCCCTCTTTGTCCTGTATTTTAGTT 283863 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | |||| |||||| ||||| | || ||||| || || || ||||| || || ||| Sbjct 283864 TTCACATTTTCAATAGTGTCGGACGGTTCCACTTCGAGCGTGATTGTTTTTCCAGTGAGC 283923 Query 193341 GTTTTTACAAATATTTGCAT 193360 ||||| |||||||||||||| Sbjct 283924 GTTTTAACAAATATTTGCAT 283943 Score = 120 bits (132), Expect = 5e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 |||||||||||||| | ||| || |||||||| ||||| ||||| ||||||||||| ||| Sbjct 282394 CCGGCAAAAATTAAACGCTGCTGGTCAGGAGGAATTCCCTCTTTGTCTTGTATTTTCGTT 282453 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | ||| || || || || | ||| ||||| || || || |||||||| || | | Sbjct 282454 TTCACATTATCGATTGTGTCCGACGGCTCCACTTCAAGGGTAATCGTTTTACCAGTCAAC 282513 Query 193341 GTTTTTACAAATATTTGCATT 193361 || || |||||||| |||||| Sbjct 282514 GTCTTCACAAATATCTGCATT 282534 Score = 114 bits (126), Expect = 2e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 |||||||||||||| | || || |||||||| || || || || ||||| ||||| || Sbjct 283517 CCGGCAAAAATTAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGAATTTTCGTC 283576 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | |||| ||| ||||| |||| ||| ||||| || ||||| || ||||| || | | Sbjct 283577 TTCACATTTTCAATGGTATCCGAAGGCTCCACTTCCAGTGTTATTGTCTTACCGGTCAAC 283636 Query 193341 GTTTTTACAAATATTTGCATT 193361 ||||| ||||| || |||||| Sbjct 283637 GTTTTCACAAAGATCTGCATT 283657 Score = 104 bits (114), Expect = 4e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| || | ||| ||||| || || || || ||||| ||||| || || | Sbjct 282676 CCAGCAAAAATCAACCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGAATCTTCGCC 282735 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | ||| |||||||| |||| ||| ||||| ||||| || || || || ||||| Sbjct 282736 TTGACATTCTCTATAGTATCAGAAGGCTCCACTTCCAGAGTGATGGTCTTTCCAGTTAGA 282795 Query 193341 GTTTTTACAAATATTTGCAT 193360 ||||| |||||||||||||| Sbjct 282796 GTTTTCACAAATATTTGCAT 282815 Score = 100 bits (110), Expect = 5e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| | | ||| |||||||| || || ||||| || ||||| ||||| || Sbjct 284086 CCCGCAAAAATAAGACGCTGCTGATCAGGCGGGATGCCTTCCTTGTCTTGGATTTTTGTC 284145 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | ||| || || || || | || |||||||| ||||| ||||| || || || Sbjct 284146 TTCACGTTTTCGATGGTGTCCGATGGTTCCACTTCTAGCGTTATTGTTTTGCCCGTCAGA 284205 Query 193341 GTTTTTACAAATATTTGCAT 193360 ||||| |||||||||||||| Sbjct 284206 GTTTTGACAAATATTTGCAT 284225 Score = 100 bits (110), Expect = 5e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || || || |||| | ||||||||| || || ||||| || |||||||| || || || Sbjct 284654 CCAGCGAAGATTAGACGCTGTTGATCGGGTGGAATTCCCTCCTTATCTTGAATCTTCGTC 284713 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | || |||||| ||||||| |||||| || || || ||||| || || |||| Sbjct 284714 TTCACGTTATCAATAGTGTCGGAAGGCTCAACCTCCAGCGTAATAGTCTTGCCGGTTAAT 284773 Query 193341 GTTTTTACAAATATTTGCAT 193360 ||||||||||| || ||||| Sbjct 284774 GTTTTTACAAAGATCTGCAT 284793 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 |||||||||||||| | ||| ||||| || ||||| ||||| || ||||| ||||| | | Sbjct 282956 CCGGCAAAAATTAAGCGCTGCTGATCTGGTGGTATGCCTTCCTTGTCTTGAATTTTAGCT 283015 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | || ||| ||||| || | || || || | ||| || || || || |||| Sbjct 283016 TTCACGTTCTCAATCGTATCTGACGGTTCGACCTCCAAAGTGATCGTCTTCCCGGTTAAA 283075 Query 193341 GTTTTTACAAATATTTGCAT 193360 ||||| || ||||||||||| Sbjct 283076 GTTTTGACGAATATTTGCAT 283095 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 ||||| || || | | ||| || ||||| || || || ||||| ||||| ||||| | | Sbjct 284370 CCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATACCCTCTTTGTCTTGGATTTTTGCT 284429 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | ||| ||| || ||||| | || ||||| || || |||||||| || || | | Sbjct 284430 TTCACATTCTCAATGGTGTCGGACGGTTCCACTTCGAGCGTAATAGTTTTTCCGGTCAAC 284489 Query 193341 GTTTTTACAAATATTTGCATT 193361 || || ||||||||||||||| Sbjct 284490 GTCTTGACAAATATTTGCATT 284510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899635473520560