Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq62 107 3e-18 >seq62 Length=382019 Score = 107 bits (118), Expect = 3e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| ||||||| | ||||||||||| || || | ||||| ||| || Sbjct 283943 ATGCAAATATTTGTTAAAACGCTCACTGGAAAAACAATCACGCTCGAAGTGGAACCGTCC 283884 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||| ||||||| ||||||||| || ||||| ||||| || || || ||| Sbjct 283883 GACACTATTGAAAATGTGAAAACTAAAATACAGGACAAAGAGGGCATCCCGCCGGATCAA 283824 Query 155943 CAAAGATTGATTTATGCCGGTAAG 155966 || | || || | ||| |||||| Sbjct 283823 CAGCGGTTAATATTTGCTGGTAAG 283800 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | ||||| || || || || || || || || || |||||| || Sbjct 283095 ATGCAAATATTCGTCAAAACTTTAACCGGGAAGACGATCACTTTGGAGGTCGAACCGTCA 283036 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||||||| |||||| ||||| || ||||||||||| ||||| || Sbjct 283035 GATACGATTGAGAACGTGAAAGCTAAAATTCAAGACAAGGAAGGCATACCACCAGATCAG 282976 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 || | || |||| |||||||| Sbjct 282975 CAGCGCTTAATTTTTGCCGGTA 282954 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| |||||| | || || |||||||| ||||| ||||| | ||||| || || Sbjct 282534 AATGCAGATATTTGTGAAGACGTTGACTGGTAAAACGATTACCCTTGAAGTGGAGCCGTC 282475 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || || ||||||| ||||||||||| ||||| || || ||||| || || Sbjct 282474 GGACACAATCGATAATGTGAAAACGAAAATACAAGACAAAGAGGGAATTCCTCCTGACCA 282415 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 || | || |||| |||||||| Sbjct 282414 GCAGCGTTTAATTTTTGCCGGTA 282392 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||| |||| || ||||| || || ||||||| ||| || Sbjct 284225 ATGCAAATATTTGTCAAAACTCTGACGGGCAAAACAATAACGCTAGAAGTGGAACCATCG 284166 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||||||| | ||||| ||||| || |||||||| || || || || Sbjct 284165 GACACCATCGAAAACGTGAAGACAAAAATCCAAGACAAGGAAGGCATCCCGCCTGATCAG 284106 Query 155943 CAAAGATTGATTTATGCCGGTAAG 155966 || | | |||| ||| |||||| Sbjct 284105 CAGCGTCTTATTTTTGCGGGTAAG 284082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731856603242800