Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq62 118 2e-21 >seq62 Length=382019 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||| ||||| ||||| | ||| || ||||| || ||||| ||||| ||||||||||| Sbjct 282392 TACCGGCAAAAATTAAACGCTGCTGGTCAGGAGGAATTCCCTCTTTGTCTTGTATTTTCG 282451 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||| |||||| || | || |||| || ||||| || ||||| ||||||||||| | Sbjct 282452 TTTTCACATTATCGATTGTGTCCGACGGCTCCACTTCAAGGGTAATCGTTTTACCAGTCA 282511 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 | || || | ||||||||||||| Sbjct 282512 ACGTCTTCACAAATATCTGCATT 282534 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| ||||| | ||||||||| || || || || ||||| || ||||||||| Sbjct 283801 TTACCAGCAAATATTAACCGCTGTTGATCCGGCGGGATGCCCTCTTTGTCCTGTATTTTA 283860 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 |||| ||||| |||| || |||| ||| ||||| || || || ||||| ||||| Sbjct 283861 GTTTTCACATTTTCAATAGTGTCGGACGGTTCCACTTCGAGCGTGATTGTTTTTCCAGTG 283920 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 | ||||||| |||||| ||||| Sbjct 283921 AGCGTTTTAACAAATATTTGCAT 283943 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || || | ||| ||||| ||||| || || ||||| ||||| || || Sbjct 282673 TTACCAGCAAAAATCAACCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGAATCTTC 282732 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || ||||| ||||| ||| || | || ||||| ||||| ||||| || |||||| Sbjct 282733 GCCTTGACATTCTCTATAGTATCAGAAGGCTCCACTTCCAGAGTGATGGTCTTTCCAGTT 282792 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 | ||||| | |||||| ||||| Sbjct 282793 AGAGTTTTCACAAATATTTGCAT 282815 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 ||||||| ||||||| | ||||||||| ||||| ||||| || |||||||| || || Sbjct 284652 TACCAGCGAAGATTAGACGCTGTTGATCGGGTGGAATTCCCTCCTTATCTTGAATCTTCG 284711 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 | || || ||| |||| || || | || || || || ||||| || || || |||| Sbjct 284712 TCTTCACGTTATCAATAGTGTCGGAAGGCTCAACCTCCAGCGTAATAGTCTTGCCGGTTA 284771 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 ||||||| | ||| |||||||| Sbjct 284772 ATGTTTTTACAAAGATCTGCAT 284793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984458771227050