Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq62 127 4e-24 >seq62 Length=382019 Score = 127 bits (140), Expect = 4e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| ||||||||||| | ||| |||||||| || ||||| ||||| ||||||||||| Sbjct 282392 TACCGGCAAAAATTAAACGCTGCTGGTCAGGAGGAATTCCCTCTTTGTCTTGTATTTTCG 282451 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 |||| |||||| || || || |||| || ||||| || ||||| ||||||||||| | Sbjct 282452 TTTTCACATTATCGATTGTGTCCGACGGCTCCACTTCAAGGGTAATCGTTTTACCAGTCA 282511 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 | || || | |||||||||||| Sbjct 282512 ACGTCTTCACAAATATCTGCATT 282534 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||||||||| ||||| | |||||| || || || || || ||||| || ||||||||| Sbjct 283801 TTACCAGCAAATATTAACCGCTGTTGATCCGGCGGGATGCCCTCTTTGTCCTGTATTTTA 283860 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 |||| ||||| ||||| || |||| ||| ||||| || || || ||||| ||||| Sbjct 283861 GTTTTCACATTTTCAATAGTGTCGGACGGTTCCACTTCGAGCGTGATTGTTTTTCCAGTG 283920 Query 172047 AATGTTTTAATGAATATCTGCAT 172069 | ||||||| ||||| ||||| Sbjct 283921 AGCGTTTTAACAAATATTTGCAT 283943 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| ||||||||||| | ||| || || |||||||| ||||| || ||||| |||||| Sbjct 282954 TACCGGCAAAAATTAAGCGCTGCTGATCTGGTGGTATGCCTTCCTTGTCTTGAATTTTAG 283013 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| || || || |||||||||| ||| || || | ||| || || || || |||| Sbjct 283014 CTTTCACGTTCTCAATCGTATCTGACGGTTCGACCTCCAAAGTGATCGTCTTCCCGGTTA 283073 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 | ||||| | |||||| ||||| Sbjct 283074 AAGTTTTGACGAATATTTGCAT 283095 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 |||||||||||||| || | ||| || || ||||| || || ||||| ||||| || || Sbjct 282673 TTACCAGCAAAAATCAACCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGAATCTTC 282732 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 || ||||| ||||||||| || | || ||||| ||||| ||||| || |||||| Sbjct 282733 GCCTTGACATTCTCTATAGTATCAGAAGGCTCCACTTCCAGAGTGATGGTCTTTCCAGTT 282792 Query 172047 AATGTTTTAATGAATATCTGCAT 172069 | ||||| | ||||| ||||| Sbjct 282793 AGAGTTTTCACAAATATTTGCAT 282815 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171925 GTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTT 171984 ||||||| || || || | | ||| ||||||||||| || || ||||| ||||| |||| Sbjct 284365 GTTTACCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATACCCTCTTTGTCTTGGATTT 284424 Query 171985 TATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 172044 | ||| ||||| || || || |||| ||| ||||| || ||||| ||||| || | Sbjct 284425 TTGCTTTCACATTCTCAATGGTGTCGGACGGTTCCACTTCGAGCGTAATAGTTTTTCCGG 284484 Query 172045 TTAATGTTTTAATGAATATCTGCATT 172070 | || || || | ||||| |||||| Sbjct 284485 TCAACGTCTTGACAAATATTTGCATT 284510 Score = 89.7 bits (98), Expect = 9e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||| || |||| | |||||| || ||||| ||||| || |||||||| || || Sbjct 284652 TACCAGCGAAGATTAGACGCTGTTGATCGGGTGGAATTCCCTCCTTATCTTGAATCTTCG 284711 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 | || || ||| ||||| || || | || || || || ||||| || || || |||| Sbjct 284712 TCTTCACGTTATCAATAGTGTCGGAAGGCTCAACCTCCAGCGTAATAGTCTTGCCGGTTA 284771 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 ||||||| | || |||||||| Sbjct 284772 ATGTTTTTACAAAGATCTGCAT 284793 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| ||||||||||| | || |||||||| || || || || || ||||| ||||| Sbjct 283515 TACCGGCAAAAATTAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGAATTTTCG 283574 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 | || ||||| || ||||| || | || ||||| || || || || ||||| || | Sbjct 283575 TCTTCACATTTTCAATGGTATCCGAAGGCTCCACTTCCAGTGTTATTGTCTTACCGGTCA 283634 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 | ||||| | || ||||||||| Sbjct 283635 ACGTTTTCACAAAGATCTGCATT 283657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905116958201400