Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq69 113 6e-19 seq81 109 7e-18 seq85 104 3e-16 seq27 89.7 6e-12 >seq69 Length=365491 Score = 113 bits (124), Expect = 6e-19 Identities = 153/211 (73%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260 |||||||| || | |||||||||||||||||||||||||| ||||| || || | | Sbjct 156904 TCGTTGCTGAACGTCAGGCCGGGCATGAGGCCGCGCTTCTTTAGCCAGAATATCGAGGCA 156963 Query 869261 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAG 869320 ||||| |||||||| || |||||||||||||| ||||| | | || || ||| || Sbjct 156964 AAACTTCCCGAGAAGAATATGCCCTCGACGGCAGCAAACGCCACCAGTCGGTCGCTGAA- 157022 Query 869321 GTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGAC 869380 | ||| | || | | |||||| || |||||||||||||| ||| | || || Sbjct 157023 -CGGCGA-CCGCTGGTCGGCGATCCAACGCAGAGCCCAGTCGGCCTTCTTCTTGACGCAC 157080 Query 869381 GGCACCGTGTCGATGGCGCGAAAGAGGTGGT 869411 || | || || |||||| || || |||| Sbjct 157081 GGAATGGTCTCAATGGCGTTGAACAGATGGT 157111 Score = 105 bits (116), Expect = 8e-17 Identities = 219/320 (68%), Gaps = 17/320 (5%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 |||||||||||| || ||||||||||||||||| || || ||||| |||| ||||| Sbjct 156521 GTACTCGCCCACCTTCCTTTCGAAAAAGTTGGTCTTACCTTCCAGCGATATCATTTCCAT 156580 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCA--TCCGAGCGACGCGAGCAGG 868816 | |||||| || |||||| ||| ||||| || ||| | |||| Sbjct 156581 GAAGTCGAACGGATTCTCAACCTTGTATATCTTGTCGCAGTTCAATTCGA--CCAGCAAA 156638 Query 868817 CGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCC 868876 |||||||| || |||| ||||| || | |||||| || ||||||||| || || | Sbjct 156639 CGGTCGGCTACGTACTCTATGTATTGACGCATGAGTACGCAGTTCATGCCAATCAGGTCG 156698 Query 868877 ACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGC 868936 || || |||| |||| | | ||||| | ||| || || ||||| |||||||||| Sbjct 156699 ACGGGAAGCGCCTCGGTGAGGAACTCCTGCTCAATGAGCACCGCCTCCCGGATGATCTGC 156758 Query 868937 ---CTGGGCACGTCGGCCGAGGGCTTG---TTGACGAGCATCGTGTAGAGCAGGCAGGCA 868990 || || | | | || |||| || | | | | | | ||||||||||| Sbjct 156759 TCGATGCGCTCCTTG---CTGGTCTTGCGCTTCAGGTG---GGAGAAAAGCAGGCAGGCG 156812 Query 868991 AAGTCGCAGTGC-AACCCTA 869009 |||||||||||| ||||||| Sbjct 156813 AAGTCGCAGTGCAAACCCTA 156832 >seq81 Length=324763 Score = 109 bits (120), Expect = 7e-18 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 ||||| ||||| || ||||| || || | | |||||||| ||| ||||| |||| || Sbjct 18166 AGGCGGACGGCTGTTTGGATTTCTCGTGAACTGATCGTGTGGCGGTTGTTGTAGTGGGCA 18225 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 ||||| | ||||| | | || || |||| || |||||||||||| ||||| | Sbjct 18226 AGACGAGACGACTCGGCGGCAATTCGATCGAACACGTCGTTGACAAAGCTATTCATAATT 18285 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||| | ||| || || || |||||| ||||||||||| | ||||||||||||| Sbjct 18286 GACATAGCTTTGCTGCTTATTCCAGTGTCGGGATGCACCTGCTTCAACACCTTGTAGATG 18345 >seq85 Length=321445 Score = 104 bits (114), Expect = 3e-16 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 ||||| ||||| || ||||| || || | | |||||||| ||| ||||| |||| || Sbjct 653 AGGCGGACGGCTGTTTGGATTTCTCGTGAACTGATCGTGTGGCGGTTGTTGTAGTGGGCA 712 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 ||||| | ||| | | | || || |||| || |||||||||||| ||||| | Sbjct 713 AGACGAGACGACTCAGCGGCAATTCGATCGAACACGTCGTTGACAAAGCTATTCATAATT 772 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||| | ||| || || || |||||| ||||||||||| | ||||||||||||| Sbjct 773 GACATAGCTTTGCTGCTTATTCCAGTGTCGGGATGCACCTGCTTCAACACCTTGTAGATG 832 >seq27 Length=609946 Score = 89.7 bits (98), Expect = 6e-12 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254350 CAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTT 1254409 |||||| ||| ||| | ||| || || || |||||||| || || | || || ||||| Sbjct 310914 CAGTTCACCGGGCAACAGCAGACGAACTGCAGTCTGGATTTCACGAGAGCTGACCGTGTG 310855 Query 1254410 GCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTT 1254469 || ||||| | || |||||| | ||||| | |||||||||||| | ||| || Sbjct 310854 TCGATTGTTGTACTGTGCCAGATGAGACGCCTCAGCAGCGATGCGGTCGAAAACGTCATT 310795 Query 1254470 GACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1254529 ||||| ||||||| ||||| | ||| || || ||| || ||||| || || Sbjct 310794 CACAAAGCTATTCATGATAGACATAGCTTTGCTGCTAATCCCCGTATCTGGGTGTACTTG 310735 Query 1254530 CTTGAGCACCTTGTAGATG 1254548 ||| | |||||||| ||| Sbjct 310734 CTTCAAAACCTTGTATATG 310716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107001085138511