Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq62 109 5e-19 seq21 95.1 1e-14 >seq62 Length=382019 Score = 109 bits (120), Expect = 5e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || ||| | ||||| |||||||||||||||||||| ||| | || Sbjct 284509 ATGCAAATATTTGTCAAGACGTTGACCGGAAAAACTATTACGCTCGAAGTGGAACCGTCC 284450 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||| |||||||||||||| || || || || || || Sbjct 284449 GACACCATTGAGAATGTGAAAGCAAAAATCCAAGACAAAGAGGGTATTCCACCTGACCAG 284390 Query 24824 CAACGTTTGATCTTTGCCGGGAAAC 24848 || ||| | ||||| ||||| |||| Sbjct 284389 CAGCGTCTCATCTTCGCCGGTAAAC 284365 Score = 104 bits (114), Expect = 2e-17 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||||||||| || || ||||| || ||||||||||| ||| | || Sbjct 283943 ATGCAAATATTTGTTAAAACGCTCACTGGAAAAACAATCACGCTCGAAGTGGAACCGTCC 283884 Query 24764 GACACAGTAGAAACGGT-AAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || ||||| ||| || || |||||||| || || || || ||||| Sbjct 283883 GACACTATTGAAAATGTGAAAACTAAA-ATACAGGACAAAGAGGGCATCCCGCCGGATCA 283825 Query 24823 ACAACGTTTGATCTTTGCCGGGAA 24846 ||| || || || ||||| || || Sbjct 283824 ACAGCGGTTAATATTTGCTGGTAA 283801 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || ||| | || |||||||| ||||| || ||||| || | | Sbjct 282533 ATGCAGATATTTGTGAAGACGTTGACTGGTAAAACGATTACCCTTGAAGTGGAGCCGTCG 282474 Query 24764 GACACAGTAGAAACGGT-AAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || ||||| ||| || ||||||||||| ||||| ||||| || || Sbjct 282473 GACACAATCGATAATGTGAAAACGAAA-ATACAAGACAAAGAGGGAATTCCTCCTGACCA 282415 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 || ||||| || |||||||| Sbjct 282414 GCAGCGTTTAATTTTTGCCGG 282394 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| ||||||| || ||||||||||| || || || | || Sbjct 284793 ATGCAGATCTTTGTAAAAACATTAACCGGCAAGACTATTACGCTGGAGGTTGAGCCTTCC 284734 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || || || ||| ||||| || || ||||| || |||||||| Sbjct 284733 GACACTATTGATAACGTGAAGACGAA-GATTCAAGATAAGGAGGGAATTCCACCCGATCA 284675 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||| ||| | ||||| || || Sbjct 284674 ACAGCGTCTAATCTTCGCTGG 284654 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || ||||| ||||| || ||||||||||| ||| | || Sbjct 283373 ATGCAGATTTTTGTGAAAACTCTGACCGGGAAAACGATCACGCTCGAAGTGGAACCGTCC 283314 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || ||||| || ||||| || || || ||||| || ||| Sbjct 283313 GATACGATCGAAAACGTGAAGACGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAA 283254 Query 24824 CAACGTTTGATCTTTGCCGGGAAACA 24849 || || |||||||||| || || || Sbjct 283253 CAGCGGCTGATCTTTGCTGGTAAGCA 283228 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || || || ||||| || ||||| ||||| ||| | | Sbjct 284225 ATGCAAATATTTGTCAAAACTCTGACGGGCAAAACAATAACGCTAGAAGTGGAACCATCG 284166 Query 24764 GACACAGTAGAAACGGTAAA-ACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || |||||| ||||||||||| ||||| || || || ||||| Sbjct 284165 GACACCATCGAAAACGTGAAGACAAAA-ATCCAAGACAAGGAAGGCATCCCGCCTGATCA 284107 Query 24823 ACAACGTTTGATCTTTGCCGGGAA 24846 || ||| | || ||||| || || Sbjct 284106 GCAGCGTCTTATTTTTGCGGGTAA 284083 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | |||||| | |||||||| || || || || ||||| || | | Sbjct 283656 ATGCAGATCTTTGTGAAAACGTTGACCGGTAAGACAATAACACTGGAAGTGGAGCCTTCG 283597 Query 24764 GACACAGTAGAAACGGT-AAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || || || ||| || |||||||| || || || ||||| || || Sbjct 283596 GATACCATTGAAAATGTGAAGACGAAA-ATTCAAGACAAGGAGGGCATTCCTCCTGACCA 283538 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 |||||||| || |||||||| Sbjct 283537 GCAACGTTTAATTTTTGCCGG 283517 >seq21 Length=749496 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 139105 ACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTA 139164 || ||||||| | | ||||| || || |||| |||||||| ||||| ||||| Sbjct 57266 ACCTCGTCGGCGGAACAATATTCCACTATCTCGGTGCACAAATTTGAGCACTTAATCGTG 57325 Query 139165 CCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTG 139224 || || ||||||||||| ||||||||| ||||| || ||||||| ||| |||| ||| Sbjct 57326 CCCAAGTTTTGTTGATTCGATTTTCGGTTGCAAGCGTCCTTGTAAACCATGAACGGAGTG 57385 Query 139225 CCAGTTTCCACTTGTGTCTCTATAATG 139251 || || || | ||| | ||| || ||| Sbjct 57386 CCCGTCTCGATTTGCGACTCAATTATG 57412 Score = 87.8 bits (96), Expect = 2e-12 Identities = 184/271 (68%), Gaps = 10/271 (4%) Strand=Plus/Plus Query 138672 CCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACT 138731 ||||||||||| ||| ||||| | || ||||||||| ||||| || || || || Sbjct 55208 CCAGTCCCACAGATCAGTAGGTGTGATGCCCCACATATCATACTGCAATATCCCTTTGCT 55267 Query 138732 TGCGGGACTGCCTTCGTACGAATCGTATA--CACCAAACTCTTGCGCCAACTCGTTGCTC 138789 |||| || ||||||| ||| ||| || || || | ||||||||| |||| Sbjct 55268 AACGGGTGATCCCTCGTACG--TCGCATAGGGTCCCAAGTCCTTGGCCAACTCGCAGCTC 55325 Query 138790 GCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGC---AATCGGGCC 138846 || || | || ||| |||||| |||||| ||| || |||||||| ||| || Sbjct 55326 GCTTCCAATGCGGCATGGTAAATGGTTTCGAAAATATGACGATTGAGCTTGAAT---GCT 55382 Query 138847 TCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCC 138906 || || |||| |||| ||| | | | || ||||| || ||||| ||||| || Sbjct 55383 TCTGCAGACTCGAACGGATAGCGCATTAAAATAAAAGCGTCCGCGAGCCCCTGCACTCCA 55442 Query 138907 ACTCCGACAGGGCGATGGCGCAGATTTGACG 138937 | || | || ||||| |||| ||| |||| Sbjct 55443 ATGCCTATGGGACGATGTCGCATATTGGACG 55473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449888135279240