Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq69 136 6e-26 seq118 123 4e-22 seq1173 105 1e-16 seq81 105 1e-16 seq27 105 1e-16 seq85 102 1e-15 seq242 96.9 5e-14 >seq69 Length=365491 Score = 136 bits (150), Expect = 6e-26 Identities = 235/337 (70%), Gaps = 16/337 (5%) Strand=Plus/Plus Query 794337 GGCACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCG 794396 ||||||| |||| || || | |||||||| || |||||||||||||||||||| Sbjct 156880 GGCACCT-CGTCCCGGGATATGAGCTCGTTGCTGAACGTCAGGCCGGGCATGAGGCCGCG 156938 Query 794397 CTTCTTGAGCCAAAAGAT---GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGC 794453 |||||| ||||| || || |||| ||||| |||||||| || |||||||||||||| Sbjct 156939 CTTCTTTAGCCAGAATATCGAGGCA---AAACTTCCCGAGAAGAATATGCCCTCGACGGC 156995 Query 794454 GGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCAT 794513 ||||| | || || || ||| || | | | || | | |||||| || Sbjct 156996 AGCAAACGCCACCAGTCGGTCGCTGAACGGCGACCG---CTGGTCGGCGATCCAACGCAG 157052 Query 794514 CGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC 794573 ||||| || ||||| ||| | || | || | || || |||||| || || |||| Sbjct 157053 AGCCCAGTCGGCCTTCTTCTTGACGCACGGAATGGTCTCAATGGCGTTGAACAGATGGTT 157112 Query 794574 ---CTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTG 794630 || |||| | ||| | | ||| ||||| || || || ||| | || ||||| Sbjct 157113 GCGCTGCTCGTC---GTCTTGTATGTAAGTGTCAATCAGCAGGCTGTACATTTCCGAGTG 157169 Query 794631 GATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 |||||| |||||||| || || ||||| ||||||||| Sbjct 157170 GATGTTCTCGATGGCTATTTGAAAGCCGTAAAAGCAG 157206 Score = 102 bits (112), Expect = 1e-15 Identities = 167/239 (70%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 ||||||||||| || ||||||||||||||||| || || ||||| |||| ||||| Sbjct 156522 TACTCGCCCACCTTCCTTTCGAAAAAGTTGGTCTTACCTTCCAGCGATATCATTTCCATG 156581 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCA--CCCGAGCGACGCAAGCAGGC 794025 | |||||| || | | ||| ||| ||||| | ||| | |||| | Sbjct 156582 AAGTCGAACGGATTCTCAACCTTGTATATCTTGTCGCAGTTCAATTCGA--CCAGCAAAC 156639 Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCA 794085 ||||||| ||| | || ||||| || | |||||| || ||||||||| || || | | Sbjct 156640 GGTCGGCTACGTACTCTATGTATTGACGCATGAGTACGCAGTTCATGCCAATCAGGTCGA 156699 Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGC 794144 |||| |||| |||| ||| ||||| | ||| || || ||||| |||||||||| Sbjct 156700 CGGGAAGCGCCTCGGTGAGGAACTCCTGCTCAATGAGCACCGCCTCCCGGATGATCTGC 156758 Score = 86.0 bits (94), Expect = 1e-10 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 796192 TTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGA 796251 || ||| ||| || |||||| ||| ||||| ||||| || |||| | ||| ||||| Sbjct 157308 TTTTCAAACACTATTCCGTCGGAGGCCGCGAAGAAGGCCAGCACGTACGAGATGAAGTGC 157367 Query 796252 CGCTCGTCGTCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCG 796311 ||||| | || | | |||| | | | |||| || ||||| ||||||||| Sbjct 157368 TTCTCGTTGGCGTTCAATTTCTCCCAATCGGTCATGTCCCTGCTCAGGTCCACCTCCTCG 157427 Query 796312 GCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTA 796343 |||||||||| || ||||||||||||||||| Sbjct 157428 ACGGTCCAAAATGAAGCCTCGGCCTTTTTGTA 157459 >seq118 Length=226858 Score = 123 bits (136), Expect = 4e-22 Identities = 174/242 (72%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||| || || ||| || ||| || || ||| Sbjct 91796 TGTACTTGGTAACAGCCTTTGTGCCCTCGCTAACTGCATGCTTGCTCAGCTCTCCTGGCA 91737 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||| || ||||| |||||||| | || |||||||| || ||||| || | Sbjct 91736 ATAGCAAGCGCACAGCAGTCTGTATCTCGCGCGAGCTGATCGTGTGTCGGTTGTT-GTAC 91678 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | || |||||| | ||| | ||||||| |||| | || || ||||| |||| Sbjct 91677 TGAGCAAGGCGGGATGACTCCGCAGCGATGCGATCGAATACATCATTAACAAAGCTGTTC 91618 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||||||||| | ||| || ||||||| ||||| ||||| ||||| | || ||| Sbjct 91617 ATGATCGACATTGCCTTGCTGCTGATGCCCGTATCGGGATGCACTTGCTTCAAAACTTTG 91558 Query 1485709 TA 1485710 || Sbjct 91557 TA 91556 Score = 123 bits (136), Expect = 4e-22 Identities = 174/242 (72%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||| || || ||| || ||| || || ||| Sbjct 94387 TGTACTTGGTAACAGCCTTTGTGCCCTCGCTAACTGCATGCTTGCTCAGCTCTCCTGGCA 94328 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||| || ||||| |||||||| | || |||||||| || ||||| || | Sbjct 94327 ATAGCAAGCGCACAGCAGTCTGTATCTCGCGCGAGCTGATCGTGTGTCGGTTGTT-GTAC 94269 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | || |||||| | ||| | ||||||| |||| | || || ||||| |||| Sbjct 94268 TGAGCAAGGCGGGATGACTCCGCAGCGATGCGATCGAATACATCATTAACAAAGCTGTTC 94209 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||||||||| | ||| || ||||||| ||||| ||||| ||||| | || ||| Sbjct 94208 ATGATCGACATTGCCTTGCTGCTGATGCCCGTATCGGGATGCACTTGCTTCAAAACTTTG 94149 Query 1485709 TA 1485710 || Sbjct 94148 TA 94147 >seq1173 Length=1433 Score = 105 bits (116), Expect = 1e-16 Identities = 170/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||| | || || || |||||||| || || ||| | ||| || || | | Sbjct 673 TGCACTTGTTAACTGCTTTAGTACCCTCGCTAACTGCATGCTTACTCAGCTCTCCTGGTA 614 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||| || ||||| |||||||| | || |||||||| || ||||| || | Sbjct 613 ATAGCAAGCGCACAGCAGTCTGTATCTCGCGCGAGCTGATCGTGTGTCGGTTGTT-GTAC 555 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | || ||||| | ||| | ||||||| | || || || || ||||| |||| Sbjct 554 TGGGCAAGGCGAGATGACTCCGAAGCGATGCGATTGAACACATCATTAACAAAGCTGTTC 495 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||||||||| | ||| || ||||||| ||||| ||||| ||||| | |||||| Sbjct 494 ATGATCGACATTGCCTTGCTGCTGATGCCCGTATCGGGATGCACTTGCTTTAAAACCTTG 435 Query 1485709 TA 1485710 || Sbjct 434 TA 433 >seq81 Length=324763 Score = 105 bits (116), Expect = 1e-16 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || || || || || || || || ||| ||||| || ||| || ||| | | Sbjct 18101 TGTATTTCGTCACCGCTTTTGTCCCTTCGCTGACTGCGTGTTTGCTCAGCTCTCCGGGAA 18160 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| ||||| || ||||| || || | | |||||||| ||| ||||| | Sbjct 18161 GCAAAAGGCGGACGGCTGTTTGGATTTCTCGTGAACTGATCGTGTGGCGGTTGTTGTAGT 18220 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || | ||||| | | || || |||| || |||||||||||| |||| Sbjct 18221 GGGCAAGACGAGACGACTCGGCGGCAATTCGATCGAACACGTCGTTGACAAAGCTATTCA 18280 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||||| | |||| || || || |||||| ||||||||||| | |||||||| Sbjct 18281 TAATTGACATAGCTTTGCTGCTTATTCCAGTGTCGGGATGCACCTGCTTCAACACCTTGT 18340 Query 1485710 A 1485710 | Sbjct 18341 A 18341 >seq27 Length=609946 Score = 105 bits (116), Expect = 1e-16 Identities = 170/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || ||||| || || ||| || |||||| ||| ||| Sbjct 310960 TGTACTTAGTAACCGCCTTTGTGCCCTCACTAACAGCATGCTTGCTCAGTTCACCGGGCA 310901 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| || || || |||||||| || || | || || ||||| || ||||| || | Sbjct 310900 ACAGCAGACGAACTGCAGTCTGGATTTCACGAGAGCTGACCGTGTGTCGATTGTT-GTAC 310842 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||| | ||||| | |||||||||||| | ||| || ||||| ||| Sbjct 310841 TGTGCCAGATGAGACGCCTCAGCAGCGATGCGGTCGAAAACGTCATTCACAAAGCTATTC 310782 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| | |||| || || ||| || ||||| || ||||| | |||||| Sbjct 310781 ATGATAGACATAGCTTTGCTGCTAATCCCCGTATCTGGGTGTACTTGCTTCAAAACCTTG 310722 Query 1485709 TA 1485710 || Sbjct 310721 TA 310720 >seq85 Length=321445 Score = 102 bits (112), Expect = 1e-15 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || || || || || || ||| || || || ||| || ||| | | Sbjct 588 TGTACTTCGTCACCGCTTTTGTCCCTTCGCTGACTGCATGTTTGCTCAGCTCTCCGGGAA 647 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| ||||| || ||||| || || | | |||||||| ||| ||||| | Sbjct 648 GCAAAAGGCGGACGGCTGTTTGGATTTCTCGTGAACTGATCGTGTGGCGGTTGTTGTAGT 707 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || | ||| | | | || || |||| || |||||||||||| |||| Sbjct 708 GGGCAAGACGAGACGACTCAGCGGCAATTCGATCGAACACGTCGTTGACAAAGCTATTCA 767 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||||| | |||| || || || |||||| ||||||||||| | |||||||| Sbjct 768 TAATTGACATAGCTTTGCTGCTTATTCCAGTGTCGGGATGCACCTGCTTCAACACCTTGT 827 Query 1485710 A 1485710 | Sbjct 828 A 828 >seq242 Length=64645 Score = 96.9 bits (106), Expect = 5e-14 Identities = 168/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||| || || || |||||||| || || ||| || ||| || || ||| Sbjct 8679 TGTACTTGTCAACTGCTTTAGTACCCTCGCTAACTGCATGCTTGCTCAGCTCTCCTGGCA 8738 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||| || ||||| |||||||| | || ||||||| | ||||| || | Sbjct 8739 ATAGCAAGCGCACAGCAGTCTGTATCTCGCGCGAGCTCATCGTGTGTCCGTTGTT-GTAC 8797 Query 1485590 GCGCCA-GGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | || |||| | ||| | ||||||| | || | || || ||||| |||| Sbjct 8798 TGGACAAGGCGAGATGACTCCGAAGCGATGCGATTGAATACATCATTAACAAAGCTGTTC 8857 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||||||||| | ||| || ||||||| ||||| ||||| ||||| | |||||| Sbjct 8858 ATGATCGACATTGCCTTGCTGCTGATGCCCGTATCGGGATGCACTTGCTTTAAAACCTTG 8917 Query 1485709 TA 1485710 || Sbjct 8918 TA 8919 Score = 96.9 bits (106), Expect = 5e-14 Identities = 168/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||| || || || |||||||| || || ||| || ||| || || ||| Sbjct 57870 TGTACTTGTCAACTGCTTTAGTACCCTCGCTAACTGCATGCTTGCTCAGCTCTCCTGGCA 57929 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||| || ||||| |||||||| | || ||||||| | ||||| || | Sbjct 57930 ATAGCAAGCGCACAGCAGTCTGTATCTCGCGCGAGCTCATCGTGTGACCATTGTT-GTAC 57988 Query 1485590 GCGCCA-GGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | || |||| | ||| | ||||||| | || | || || ||||| |||| Sbjct 57989 TGGACAAGGCGAGATGACTCCGAAGCGATGCGATTGAATACATCATTAACAAAGCTGTTC 58048 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||||||||| | ||| || ||||||| ||||| ||||| ||||| | |||||| Sbjct 58049 ATGATCGACATTGCCTTGCTGCTGATGCCCGTATCGGGATGCACTTGCTTTAAAACCTTG 58108 Query 1485709 TA 1485710 || Sbjct 58109 TA 58110 Score = 91.5 bits (100), Expect = 2e-12 Identities = 168/245 (69%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 1485466 TCGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCG 1485525 ||||| |||||| | || || || |||||||| || || ||| || ||| || | Sbjct 11420 TCGTT-TACTTGTTAACTGCTTTAGTACCCTCGCTAACTGCATGCTTGCTCAGCTCTCAT 11362 Query 1485526 CGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTA 1485585 ||| | || ||||| || ||||| |||||||| | || ||||||| || ||||| Sbjct 11361 GGCAACAGCAACCGCACAGCAGTCTGCATCTCGCGCGAGCTCATCGTGTGTCGGTTGTTG 11302 Query 1485586 GTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAG 1485645 | | ||||| | ||| | ||||||| | || | || || ||||| | Sbjct 11301 CACTGGACAAGGCGAGATGACTCCGAAGCGATGCGATTGAATACATCATTAACAAAGCTG 11242 Query 1485646 TTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACC 1485705 |||||||||||||| | ||| || ||||||| ||||| ||||| ||||| | ||| Sbjct 11241 TTCATGATCGACATTGCCTTGCTGCTGATGCCCGTATCGGGATGCACTTGCTTTAAAACC 11182 Query 1485706 TTGTA 1485710 ||||| Sbjct 11181 TTGTA 11177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916067371613837