Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq62 118 8e-22 seq55 91.5 1e-13 >seq62 Length=382019 Score = 118 bits (130), Expect = 8e-22 Identities = 114/144 (79%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | ||||| | |||||||| || || ||||||||||||||||| ||| || Sbjct 282673 TTACCAGCAAAAATCAACCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTG-AATCTT 282731 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | |||||| | |||| ||| |||||| | || ||||| ||||| || || || ||||| Sbjct 282732 CGCCTTGACATTCTCTATAGTATCAGAAGGCTCCACTTCCAGAGTGATGGTCTTTCCAGT 282791 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 || ||||| |||||||| ||||| Sbjct 282792 TAGAGTTTTCACAAATATTTGCAT 282815 Score = 118 bits (130), Expect = 8e-22 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| |||| || | || ||||||||||| || ||||||||||| |||| ||| Sbjct 283801 TTACCAGCAAATATTAACCGCTGTTGATCCGGCGGGATGCCCTCTTTGTCCTGTATTTTA 283860 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 ||| ||| |||| | |||||| || |||| ||||| || || || ||||| ||||| Sbjct 283861 GTTTTCACATTTTCAATAGTGTCGGACGGTTCCACTTCGAGCGTGATTGTTTTTCCAGTG 283920 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | |||||||||||||| ||||| Sbjct 283921 AGCGTTTTAACAAATATTTGCAT 283943 Score = 102 bits (112), Expect = 6e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 || ||| | || || | ||||| || || ||||| |||||||||||||||| ||| | Sbjct 282394 CCGGCAAAAATTAAACGCTGCTGGTCAGGAGGAATTCCCTCTTTGTCTTGTATTTTCGTT 282453 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || ||| | || | ||||| || | || |||||||| || || ||||| ||||| || Sbjct 282454 TTCACATTATCGATTGTGTCCGACGGCTCCACTTCAAGGGTAATCGTTTTACCAGTCAAC 282513 Query 29767 GTTTTAACAAATATCTGCATT 29787 || || ||||||||||||||| Sbjct 282514 GTCTTCACAAATATCTGCATT 282534 Score = 100 bits (110), Expect = 2e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTG 29724 ||||| || || |||||||||||||||||||| | |||| ||| ||| | || | ||| Sbjct 284388 TGCTGGTCAGGTGGAATACCCTCTTTGTCTTGGATTTTTGCTTTCACATTCTCAATGGTG 284447 Query 29725 TCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGC 29784 || || |||| ||||| || || |||||||| || || || || || |||||||| ||| Sbjct 284448 TCGGACGGTTCCACTTCGAGCGTAATAGTTTTTCCGGTCAACGTCTTGACAAATATTTGC 284507 Query 29785 ATT 29787 ||| Sbjct 284508 ATT 284510 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 29640 TTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAA 29699 ||| || |||||| | |||| | || || ||||| ||||||||||| ||||| || || Sbjct 283227 TTGCTTACCAGCAAAGATCAGCCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTG-AA 283285 Query 29700 TTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGC 29758 | || || || || |||| | || || || |||| ||||| || || || ||||| | Sbjct 283286 TCTTCGTCTTCACGTTTTCGATCGTATCGGACGGTTCCACTTCGAGCGTGATCGTTTTCC 283345 Query 29759 CAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || | ||||| ||||| |||||||| Sbjct 283346 CGGTCAGAGTTTTCACAAAAATCTGCAT 283373 >seq55 Length=397027 Score = 91.5 bits (100), Expect = 1e-13 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| |||||||| ||| || || || ||| |||| | |||||||| |||| || Sbjct 87312 ATACCCTCCTTGTCTTG-AATCTTCGTCTTCACATTTTCAATCGTGTCAGATGGTTCCAC 87370 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 ||| | ||| || || || || |||| |||||||||||||||||||| | ||| Sbjct 87371 TTCCAAAGTGATTGTCTTTCCGGTTAGCGTTTTAACAAATATCTGCATCTAAAA 87424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385211298552303