Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq177 206 2e-47 >seq177 Length=111185 Score = 206 bits (228), Expect = 2e-47 Identities = 793/1231 (64%), Gaps = 16/1231 (1%) Strand=Plus/Minus Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||||| |||||||| ||||| | || |||||||||||||| || || | || | Sbjct 80473 GTCATAACGCCACCAGCGGTTTCGATGCCCAGAGAAAGAGGAGTCACGTCCAAAAGCAAC 80414 Query 281723 ATATTTTGAAGTTTTTCAT-CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 281781 | || ||| | |||| | | | || |||| ||| || || || | ||||| || Sbjct 80413 AAATCTTGGACGGCCTCATGCTTATCGCCCGACAA-AATTGCCGCCTGGACTGCAGCCCC 80355 Query 281782 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT 281841 || || || || ||||| || || | | | || | || || || ||||| || | Sbjct 80354 GTAGGCGACCGCCTCATCCGGGTTGATGCTCTTGTTCAATTCCTTCCCGTTGAAGAAGTC 80295 Query 281842 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 || || | | ||||| ||||| |||| ||||| ||||| ||||||| || || Sbjct 80294 CTGCAGCAGCTTTTGCACCTTCGGAATGCGAGTAGATCCGCCAACCAATACAACGTCGTG 80235 Query 281902 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG-TTCAAGACCAG 281960 ||||| ||||| || | ||| | || | | ||| |||||||| | |||| | | Sbjct 80234 AACCTGGGATTTGTCTAATTTGGCGTCGCGAAGAGATTTCTCAACGGGATCCAAGGTC-G 80176 Query 281961 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAAT 282020 | |||||||| | ||||| || |||||| || | ||||| || | ||| | Sbjct 80175 AGCGGAACAAGTCGGCGCAAAGCTCCTCGAATCGGGCACGAGTAATCGTCGTGTAATAGT 80116 Query 282021 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT-AGTGCA 282079 | || || ||||||| | || | |||||| | | ||| |||| || | | | | Sbjct 80115 CGATGCCCTCGAACAGACTGTCTATTTCAATACTTGCTTGTGTCG-AGCTGCTCAACGTT 80057 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 282137 || || || ||||| || || || | || | ||| ||||| | ||||| || Sbjct 80056 CGCTTGGCGCGTTCGCAAGCGGTACGCAGACGTCGCAAGGC--ACGAGGATTGCCCGACA 79999 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 || | || | ||| | ||||| || |||| | || || | || || || | Sbjct 79998 TGTCCTTCTTGTTTTTGCGTTTGAACTCGGCAACGAAATGAGTGACCATGCGGTTGTCGA 79939 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 | || || || || | | |||| |||| || | | |||| ||| | ||||| | Sbjct 79938 AGTCCTCGCCGCCAAGGTGCGTATCACCTGCGGTGGACTTCACTTCGAATATACCATCCT 79879 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 | | | || || | ||||| || || || |||| ||| || || ||||||||| Sbjct 79878 CGATTGTCAGAATTGACACATCGAAAGTACCGCCGCCCAGATCGAAGATCAGTACATTCC 79819 Query 282318 TTTCT-TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 282376 ||| ||| ||||| || | ||||| || | ||| ||||| || |||||||| Sbjct 79818 GCTCTCCTGT-ACCCTTTTTGTCTAATCCATAGGCGATAGCGGCAGCCGTCGGTTCATTG 79760 Query 282377 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 282436 ||||| | || |||||| || |||| || | ||||| || || || || || ||||| Sbjct 79759 ATAATGCGCAGAACATTTAGGCCAGATATAGTACCTGCGTCCTTTGTTGCCTGCCTTTGA 79700 Query 282437 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAA 282496 |||||||| || || || ||||| ||||| |||||||| | || | || || | ||| Sbjct 79699 GAATCGTTGAAGTACGCCGGAACGGTAATCACGGCATCCTTCACCGCCTTGCCCAAGTAA 79640 Query 282497 GCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG--GAGAAT 282554 || || || | |||||| ||| || | ||| | |||| || | | ||| Sbjct 79639 GCCTCGGCCGTCTCTTTCATCTTAACCAACACCATAGCGCTGATTTCCTCGGGCGTGAAC 79580 Query 282555 ATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 282614 || |||| ||| | || |||| | | || || | || | | | | Sbjct 79579 AT--CTTGTTTTCGCCCTTGTACTCCACTTGGATTTTCGGCTTTCCAGCATCGCTGACCA 79522 Query 282615 CTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 282674 | || || ||||||| ||||| || || ||||| ||||| || | ||| | Sbjct 79521 CCTTGAACGGCCAATGCTTCATGTCCGACTGAACGGCCGAGTCATCGTAACGCCGACCGA 79462 Query 282675 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTG 282734 | || || || || || |||| ||||| ||||| | || | || | ||||||| Sbjct 79461 TCAAGCGCTTCGCGTCGAAAACGGTATTATGCGGATTCAAGGCGACCTGGTTCTTGGCTG 79402 Query 282735 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 282794 ||||||| ||||| | || || || || || | || || || || ||||| || | Sbjct 79401 CATCTCCGATCAGTCGCTCCGTATCCGTGAAAGCCACGTAGCTGGGCGTAGTGCGGTTGC 79342 Query 282795 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 282854 | ||||| || || ||||| || || || |||| || | || || || ||||| | | Sbjct 79341 CCTGATCGTTGGCGATAATCTCTACCTTGCCATGCTGGAACACTCCAACGCAACTGTACG 79282 Query 282855 TTGTTCCTAAATCAATACCAATAGCAATTTT 282885 | || || |||||||| |||| ||| |||| Sbjct 79281 TCGTACCCAAATCAATGCCAACAGCGTTTTT 79251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740547771812358