Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq62 96.9 3e-15 >seq62 Length=382019 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 137271 ACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTG 137330 ||||||| ||||||| || ||||| || || ||||||||||||||||| |||||| Sbjct 284933 ACCAGCAAAGATCAGTCGCTGCTGGTCAGGCGGTATGCCTTCTTTGTCCTGAATTTTAGC 284992 Query 137331 TTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAA 137390 || | | ||||||||||| | ||||| || || | ||| | ||| || || ||||| Sbjct 284993 CTTCACGTTCTCCACCGTGTCCGACGGTTCCACCTCCAAAGTTATCGTTTTTCCCGTCAA 285052 Query 137391 TGTTTTTACGAATATTTGCAT 137411 || || ||||| || ||||| Sbjct 285053 CGTCTTCACGAAAATCTGCAT 285073 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 137329 |||| ||| | || | || |||||||| || ||||||||||| ||||| |||||| Sbjct 282954 TACCGGCAAAAATTAAGCGCTGCTGATCTGGTGGTATGCCTTCCTTGTCTTGAATTTTAG 283013 Query 137330 GTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 137389 ||| | | || | ||| |||| ||||| || || | ||| | |||||| ||||| | Sbjct 283014 CTTTCACGTTCTCAATCGTATCTGACGGTTCGACCTCCAAAGTGATCGTCTTCCCGGTTA 283073 Query 137390 ATGTTTTTACGAATATTTGCAT 137411 | ||||| |||||||||||||| Sbjct 283074 AAGTTTTGACGAATATTTGCAT 283095 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 ||||| ||| | || ||||| |||||||| || || |||||||| ||||| |||||| Sbjct 284083 TTACCCGCAAAAATAAGACGCTGCTGATCAGGCGGGATGCCTTCCTTGTCTTGGATTTTT 284142 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || | | ||| | ||||| | ||||| ||||| | || | || ||||| ||| Sbjct 284143 GTCTTCACGTTTTCGATGGTGTCCGATGGTTCCACTTCTAGCGTTATTGTTTTGCCCGTC 284202 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | ||||| || ||||||||||| Sbjct 284203 AGAGTTTTGACAAATATTTGCAT 284225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488533722255600