Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq59 89.7 7e-13 seq272 86.0 8e-12 seq266 86.0 8e-12 seq148 86.0 8e-12 seq92 86.0 8e-12 seq1 86.0 8e-12 >seq59 Length=386964 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 75572 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 75513 Query 8718 CCCGACGAGGAGCA 8731 || | || |||||| Sbjct 75512 CCGGCCGGGGAGCA 75499 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/98 (80%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || | |||| |||||||| |||| |||| | |||| |||| ||| | ||||||| Sbjct 75501 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 75560 Query 139413 TACTAACGAGGATTTTGGTACACGCTGAAT-GCATTTT 139449 ||||| |||||| || ||||| ||||||| |||||| Sbjct 75561 TACTACCGAGGACGTTAGTACATGCTGAATCACATTTT 75598 >seq272 Length=60726 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 58634 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 58693 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 58694 CCGGCCGGGGAG 58705 Score = 82.4 bits (90), Expect = 1e-10 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 ||||||||| |||||||||||| ||||| |||| ||||| | |||| |||| |||||||| Sbjct 58631 CAGTCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGA 58690 Query 11786 TTCCCCGACGAGGAG 11800 ||||| | || |||| Sbjct 58691 TTCCCGGCCGGGGAG 58705 >seq266 Length=62768 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 36760 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 36701 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 36700 CCGGCCGGGGAG 36689 >seq148 Length=185163 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 170461 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 170520 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 170521 CCGGCCGGGGAG 170532 >seq92 Length=287114 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 98923 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 98864 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 98863 CCGGCCGGGGAG 98852 >seq1 Length=1771200 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 649343 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 649402 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 649403 CCGGCCGGGGAG 649414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652831065777520