Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq69 136 4e-27 seq62 111 2e-19 >seq69 Length=365491 Score = 136 bits (150), Expect = 4e-27 Identities = 211/299 (71%), Gaps = 2/299 (1%) Strand=Plus/Plus Query 120665 CCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCT 120724 ||||||| || ||||| ||||||||||| ||||||||||||||||||| ||| | ||| Sbjct 156884 CCTCGTCCCGGGATATGAGCTCGTTGCTGAACGTCAGGCCGGGCATGAGGCCGCGCTTCT 156943 Query 120725 TGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGG 120784 | | ||||||| | |||||| || ||||| ||||| | |||||| ||| ||||| | Sbjct 156944 TTAGCCAGAATATCGAGGCAAAACTTCCCGAGAAGAATATGCCCTCGACGGCAGCAAACG 157003 Query 120785 CGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCATGGCCCACTCGG 120844 | |||| || ||| |||| || | || | | ||||||| || ||||| |||| Sbjct 157004 CCACCAGTCGGTCGCTGAACGGCGACCGCTGGTCGGCGATCCAACGCAGAGCCCAGTCGG 157063 Query 120845 CCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGCATGTCGCGCTCGCCCT 120904 |||| || |||||||| || ||| | ||||| | ||| || ||||| | | Sbjct 157064 CCTTCTTCTTGACGCACGGAATGGTCTCAATGGCGTTGAACAGATGGTTGCGCTGCTCGT 157123 Query 120905 CCTC-CGCAATCAGCTGATGGATGAGCAGATTGTACATTTCCGTGTGCACGCACTCGAT 120962 | || | | | || | || ||||| |||||||||||| ||| | | |||||| Sbjct 157124 CGTCTTGTATGTAAGTG-TCAATCAGCAGGCTGTACATTTCCGAGTGGATGTTCTCGAT 157181 >seq62 Length=382019 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || |||||||| || |||||||||||||| || |||||||||||||| || || | | Sbjct 285222 CCAGCGTAAATCAGGCGCTGCTGGTCGGGCGGAATGCCTTCCTTGTCTTGAATTTTGTTC 285281 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | |||| || ||| | ||||| || |||| |||| ||||| || || || Sbjct 285282 TTCACGTTTTCAATCGAGTCCGACGGCTCGACTTCGAGCGTGATCGTTTTTCCCGTGAGT 285341 Query 133641 GTTTTTACGAAAATCTGCATGGCT 133664 ||||| |||||||||||||||||| Sbjct 285342 GTTTTCACGAAAATCTGCATGGCT 285365 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || |||||||| ||||| ||||| || || |||||||| ||| Sbjct 283228 TGCTTACCAGCAAAGATCAGCCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATC 283287 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | || | ||| |||| || ||||| |||| |||| ||||| ||| Sbjct 283288 TTCGTCTTCACGTTTTCGATCGTATCGGACGGTTCCACTTCGAGCGTGATCGTTTTCCCG 283347 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 ||||||||||| || |||||||||||| Sbjct 283348 GTCAGAGTTTTCACAAAAATCTGCATG 283374 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| ||||| |||| || |||||||| || || ||||||||||||||||| ||| || Sbjct 284082 CTTACCCGCAAAAATAAGACGCTGCTGATCAGGCGGGATGCCTTCCTTGTCTTGGATTTT 284141 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 | ||| | | || | ||||| | || ||||| || | || | |||||||| || Sbjct 284142 TGTCTTCACGTTTTCGATGGTGTCCGATGGTTCCACTTCTAGCGTTATTGTTTTGCCCGT 284201 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 ||||||||| || || || |||||| Sbjct 284202 CAGAGTTTTGACAAATATTTGCATG 284226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483410630034920