Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq62 86.0 4e-12 >seq62 Length=382019 Score = 86.0 bits (94), Expect = 4e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 33610 CCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGT 33669 ||||||||||| ||||||||||| || | || | || |||||||| |||||| | Sbjct 282394 CCGGCAAAAATTAAACGCTGCTGGTCAGGAGGAATTCCCTCTTTGTCTTGTATTTTCGTT 282453 Query 33670 TTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAA 33728 |||| ||| || | ||||| | ||||| |||| || ||||||||||| || || Sbjct 282454 TTCA-CATTATCGATTGTGTCCGACGGCTCCACTTCAAGGGTAATCGTTTTACCAGTCAA 282512 Query 33729 CGTTTTTACAAAGATCTGCAT 33749 ||| || ||||| |||||||| Sbjct 282513 CGTCTTCACAAATATCTGCAT 282533 Score = 82.4 bits (90), Expect = 5e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 33532 AAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGT 33591 || || ||||||||||| || ||||| ||||| || ||||| |||||||| || |||||| Sbjct 284520 AACCGCAACACCAAATGGAGCGTGCTTTCTTTCTGAATGTTATAATCGGACAGCGTGCGT 284579 Query 33592 TCGTCGTCCAATTGTTTTCC 33611 |||| |||| |||||| || Sbjct 284580 CCGTCTTCCAGTTGTTTGCC 284599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328697257767360