Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq62 98.7 9e-16 >seq62 Length=382019 Score = 98.7 bits (108), Expect = 9e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 131978 TGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATT 132037 || ||||| | | |||| || |||||||| || ||||| || || || || || ||| Sbjct 283228 TGCTTACCAGCAAAGATCAGCCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATC 283287 Query 132038 TTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCA 132097 || |||| | ||| | ||||||| ||| |||||||||| ||| | |||||| || Sbjct 283288 TTCGTCTTCACGTTTTCGATCGTATCGGACGGTTCCACTTCGAGCGTGATCGTTTTCCCG 283347 Query 132098 GTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||||||||| | |||||||||||| Sbjct 283348 GTCAGAGTTTTCACAAAAATCTGCATG 283374 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 131981 TTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTT 132040 ||||| | | | |||| ||||||||||| || || ||||| ||||| || ||||| Sbjct 283801 TTACCAGCAAATATTAACCGCTGTTGATCCGGCGGGATGCCCTCTTTGTCCTGTATTTTA 283860 Query 132041 TGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTC 132100 ||||| | ||| | ||| |||| ||| |||||||||| ||| | ||||| ||||| Sbjct 283861 GTTTTCACATTTTCAATAGTGTCGGACGGTTCCACTTCGAGCGTGATTGTTTTTCCAGTG 283920 Query 132101 AGAGTTTTTATGAAAATCTGCATG 132124 || ||||| | || || |||||| Sbjct 283921 AGCGTTTTAACAAATATTTGCATG 283944 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 || || || ||||| || || || || |||||||| || || |||||| | |||| Sbjct 285228 TAAATCAGGCGCTGCTGGTCGGGCGGAATGCCTTCCTTGTCTTGAATTTTGTTCTTCACG 285287 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | | || | |||||| ||||||| ||| | |||||| || || || ||||| Sbjct 285288 TTTTCAATCGAGTCCGACGGCTCGACTTCGAGCGTGATCGTTTTTCCCGTGAGTGTTTTC 285347 Query 132110 ATGAAAATCTGCATGACT 132127 | ||||||||||||| || Sbjct 285348 ACGAAAATCTGCATGGCT 285365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476601173291880