Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq62 86.0 6e-12 >seq62 Length=382019 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || ||||||||| | || ||| ||||||| ||| | | Sbjct 284509 ATGCAAATATTTGTCAAGACGTTGACCGGAAAAACTATTACGCTCGAAGTGGAACCGTCC 284450 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || ||| |||||| || ||||||||||| || || || ||| Sbjct 284449 GACACCATTGAGAATGTGAAAGCAAAAATCCAAGACAAAGAGGGTATTCCACCTGACCAG 284390 Query 25295 CAAAGACTCATTTACGGCGGCAAAC 25319 || | ||||| | || ||| |||| Sbjct 284389 CAGCGTCTCATCTTCGCCGGTAAAC 284365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445085036326560