Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq69 149 9e-30 seq118 96.9 5e-14 seq1173 93.3 6e-13 seq81 91.5 2e-12 >seq69 Length=365491 Score = 149 bits (164), Expect = 9e-30 Identities = 229/317 (72%), Gaps = 10/317 (3%) Strand=Plus/Minus Query 1455979 GAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTAC 1456038 ||||| || | |||||||| || || || |||||||| ||||||||||| |||| ||| Sbjct 157214 GAGGCTCGCTGCTTTTACGGCTTTCAAATAGCCATCGAGAACATCCACTCGGAAATGTAC 157155 Query 1456039 TCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACC-TCT-TTCG-C 1456095 || ||||| ||||| ||| | | ||| | |||| || | ||| ||| ||| | Sbjct 157154 AGCCTGCTGATTGACACTTACATACAAGAC---GACGAGCAGCGCAACCATCTGTTCAAC 157098 Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAAC 1456155 ||||| || || | |||| || | ||| |||||||||||||| || |||||| | Sbjct 157097 GCCATTGAGACCATTCCGTGCGTCAAGAAGAAGGCCGACTGGGCTCTGCGTTGGATCGCC 157038 Query 1456156 AAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCT 1456214 | || | ||| | | || || || || || | ||||| || ||||||||||| | Sbjct 157037 GACCAGCGG-TCGCCGTTCAGC-GACCGACTGGTGGCGTTTGCTGCCGTCGAGGGCATAT 156980 Query 1456215 TTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTC 1456274 | |||||||| ||||| | | || || ||||| ||||||||||||||||||||||| | Sbjct 156979 TCTTCTCGGGAAGTTTTGCCTCGATATTCTGGCTAAAGAAGCGCGGCCTCATGCCCGGCC 156920 Query 1456275 TTCTGCTTTAGCAACGA 1456291 | | || |||||||| Sbjct 156919 TGACG-TTCAGCAACGA 156904 >seq118 Length=226858 Score = 96.9 bits (106), Expect = 5e-14 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||| || | ||||| ||||| ||| || || |||| | | |||| | Sbjct 91553 ATATACAAAGTTTTGAAGCAAGTGCATCCCGATAC-----GGGCATCAGC-AGCAAGGCA 91606 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||| ||||| || || | |||| ||||||| | ||| | Sbjct 91607 ATGTCGATCATGAACAGCTTTGTTAATGATGTATTCGATCGCATCGCTGCGGAGTCATCC 91666 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | | |||||| || |||||||| || |||||||||| ||||| || ||| Sbjct 91667 CGCCTTGCTCAGTACAACAACCGACACACGATCAGCTCGCGCGAGATACAGACTGCTGTG 91726 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| || | ||| || || ||| || ||| || || ||||||||| Sbjct 91727 CGCTTGCTATTGCCAGGAGAGCTGAGCAAGCATGCAGTTAGCGAGGGCAC 91776 Score = 96.9 bits (106), Expect = 5e-14 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||| || | ||||| ||||| ||| || || |||| | | |||| | Sbjct 94144 ATATACAAAGTTTTGAAGCAAGTGCATCCCGATAC-----GGGCATCAGC-AGCAAGGCA 94197 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||| ||||| || || | |||| ||||||| | ||| | Sbjct 94198 ATGTCGATCATGAACAGCTTTGTTAATGATGTATTCGATCGCATCGCTGCGGAGTCATCC 94257 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | | |||||| || |||||||| || |||||||||| ||||| || ||| Sbjct 94258 CGCCTTGCTCAGTACAACAACCGACACACGATCAGCTCGCGCGAGATACAGACTGCTGTG 94317 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| || | ||| || || ||| || ||| || || ||||||||| Sbjct 94318 CGCTTGCTATTGCCAGGAGAGCTGAGCAAGCATGCAGTTAGCGAGGGCAC 94367 >seq1173 Length=1433 Score = 93.3 bits (102), Expect = 6e-13 Identities = 133/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || |||||||| | ||||| ||||| ||| || || |||| | | |||| | Sbjct 430 ATATACAAGGTTTTAAAGCAAGTGCATCCCGATAC-----GGGCATCAGC-AGCAAGGCA 483 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||| ||||| || || || || | ||||||| | ||| | | Sbjct 484 ATGTCGATCATGAACAGCTTTGTTAATGATGTGTTCAATCGCATCGCTTCGGAGTCATCT 543 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | | |||||| || |||||||| || |||||||||| ||||| || ||| Sbjct 544 CGCCTTGCCCAGTACAACAACCGACACACGATCAGCTCGCGCGAGATACAGACTGCTGTG 603 Query 725091 CGCCTG 725096 ||| || Sbjct 604 CGCTTG 609 >seq81 Length=324763 Score = 91.5 bits (100), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | ||||||||||| ||| || ||| | | ||| || | Sbjct 18344 ATCTACAAGGTGTTGAAGCAGGTGCATCCCGACAC---TGGAATAAGCAGCAA--AG-CT 18291 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| || ||||| |||||||||||| || |||| || || | | ||||| | | Sbjct 18290 ATGTCAATTATGAATAGCTTTGTCAACGACGTGTTCGATCGAATTGCCGCCGAGTCGTCT 18231 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || |||||| ||| |||||||| | | || || ||||| || ||||| Sbjct 18230 CGTCTTGCCCACTACAACAACCGCCACACGATCAGTTCACGAGAAATCCAAACAGCCGTC 18171 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| | | | ||| || ||| || ||||| ||| ||| || || Sbjct 18170 CGCCTTTTGCTTCCCGGAGAGCTGAGCAAACACGCAGTCAGCGAAGGGAC 18121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177648871556646