Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq62 123 2e-23 >seq62 Length=382019 Score = 123 bits (136), Expect = 2e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 35591 TGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATC 35650 |||||||| ||||| |||| |||||| ||||||| ||||| | |||||||||| ||| Sbjct 283228 TGCTTACCAGCAAAGATCAGCCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATC 283287 Query 35651 TTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCC 35710 || ||||| || | | ||| ||| || |||||| || | |||||||||||| || Sbjct 283288 TTCGTCTTCACGTTTTCGATCGTATCGGACGGTTCCACTTCGAGCGTGATCGTTTTCCCG 283347 Query 35711 GTCAAAGTTTTCACAAATATCTGCAT 35736 |||| |||||||||||| |||||||| Sbjct 283348 GTCAGAGTTTTCACAAAAATCTGCAT 283373 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 35593 CTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 || ||| ||||| |||| ||||||||||| | || | || || |||||| ||| || Sbjct 284930 CTCACCAGCAAAGATCAGTCGCTGCTGGTCAGGCGGTATGCCTTCTTTGTCC-TGAATTT 284988 Query 35653 TTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCG 35711 | | ||||| | |||||||||| || ||||||||||| || |||||||| |||| Sbjct 284989 TAGCCTTCACGTTCTCCACCGTGTCCGACGGTTCCACCTCCAAAGTTATCGTTTTTCCCG 285048 Query 35712 TCAAAGTTTTCACAAATATCTGCAT 35736 |||| || ||||| || |||||||| Sbjct 285049 TCAACGTCTTCACGAAAATCTGCAT 285073 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 35595 TACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTT 35654 |||| ||||| || || || |||||||| | ||||| || ||||||||| ||| ||| Sbjct 283515 TACCGGCAAAAATTAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCT-TGAATTTTC 283573 Query 35655 G-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTC 35713 | ||||| | || | | || || | ||||| |||| || || || ||||| ||| Sbjct 283574 GTCTTCACATTTTCAATGGTATCCGAAGGCTCCACTTCCAGTGTTATTGTCTTACCGGTC 283633 Query 35714 AAAGTTTTCACAAATATCTGCATTC 35738 || ||||||||||| |||||||||| Sbjct 283634 AACGTTTTCACAAAGATCTGCATTC 283658 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 35595 TACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTT 35654 |||| ||||| || || ||||||||||| | ||||| | ||| ||||| || || Sbjct 282392 TACCGGCAAAAATTAAACGCTGCTGGTCAGGAGGAATTCCCTCTTTGTCTTGTATTTTCG 282451 Query 35655 GCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714 |||| | | | | ||||| || ||||| || | || ||||||||||| |||| Sbjct 282452 TTTTCACATTATCGATTGTGTCCGACGGCTCCACTTCAAGGGTAATCGTTTTACCAGTCA 282511 Query 35715 AAGTTTTCACAAATATCTGCATTC 35738 | || ||||||||||||||||||| Sbjct 282512 ACGTCTTCACAAATATCTGCATTC 282535 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 35593 CTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 |||||||||||| || | |||||||| || | || | || |||||||| ||| || Sbjct 284082 CTTACCCGCAAAAATAAGACGCTGCTGATCAGGCGGGATGCCTTCCTTGTCTTGGATTTT 284141 Query 35653 TTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 | ||||| || | | ||||| | |||||| || | ||| || ||||| ||||| Sbjct 284142 TGTCTTCACGTTTTCGATGGTGTCCGATGGTTCCACTTCTAGCGTTATTGTTTTGCCCGT 284201 Query 35713 CAAAGTTTTCACAAATATCTGCAT 35736 || |||||| |||||||| ||||| Sbjct 284202 CAGAGTTTTGACAAATATTTGCAT 284225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450784116429640