Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq62 113 5e-20 >seq62 Length=382019 Score = 113 bits (124), Expect = 5e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||| || ||||||||||| || ||||||||||| || ||||||||||| | Sbjct 282956 CCGGCAAAAATTAAGCGCTGCTGATCTGGTGGTATGCCTTCCTTGTCTTGAATTTTAGCT 283015 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || || |||| ||| || || | ||| || || || ||||||||| Sbjct 283016 TTCACGTTCTCAATCGTATCTGACGGTTCGACCTCCAAAGTGATCGTCTTCCCGGTTAAA 283075 Query 134694 GTTTTAACGAAAATTTGCAt 134713 ||||| ||||| |||||||| Sbjct 283076 GTTTTGACGAATATTTGCAT 283095 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| |||| |||||||| || ||||||||||||||||| || |||||||| Sbjct 284934 CCAGCAAAGATCAGTCGCTGCTGGTCAGGCGGTATGCCTTCTTTGTCCTGAATTTTAGCC 284993 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || |||| ||||| |||| |||||| || | ||| || ||||| || || || Sbjct 284994 TTCACGTTCTCCACCGTGTCCGACGGTTCCACCTCCAAAGTTATCGTTTTTCCCGTCAAC 285053 Query 134694 GTTTTAACGAAAATTTGCAt 134713 || || |||||||| ||||| Sbjct 285054 GTCTTCACGAAAATCTGCAT 285073 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||| | |||||||||||| ||||| |||||||| || ||||| |||||| Sbjct 284083 TTACCCGCAAAAATAAGACGCTGCTGATCAGGCGGGATGCCTTCCTTGTCTTGGATTTTT 284142 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | ||||| || | |||||| || || || || ||||| || || Sbjct 284143 GTCTTCACGTTTTCGATGGTGTCCGATGGTTCCACTTCTAGCGTTATTGTTTTGCCCGTC 284202 Query 134691 AAAGTTTTAACGAAAATTTGCAt 134713 | |||||| || || |||||||| Sbjct 284203 AGAGTTTTGACAAATATTTGCAT 284225 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||| ||||||||||| || || || || || ||||| ||||| ||||| | Sbjct 282394 CCGGCAAAAATTAAACGCTGCTGGTCAGGAGGAATTCCCTCTTTGTCTTGTATTTTCGTT 282453 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | |||||| |||| ||||| || || ||||| |||||||| || || Sbjct 282454 TTCACATTATCGATTGTGTCCGACGGCTCCACTTCAAGGGTAATCGTTTTACCAGTCAAC 282513 Query 134694 GTTTTAACGAAAATTTGCAtt 134714 || || || || || |||||| Sbjct 282514 GTCTTCACAAATATCTGCATT 282534 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||||||||| ||||||||||| || || || || ||||| |||||||| || Sbjct 282673 TTACCAGCAAAAATCAACCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGAATCTTC 282732 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| || | || || || | ||||| || ||||| ||||| || || ||| Sbjct 282733 GCCTTGACATTCTCTATAGTATCAGAAGGCTCCACTTCCAGAGTGATGGTCTTTCCAGTT 282792 Query 134691 AAAGTTTTAACGAAAATTTGCAt 134713 | |||||| || || |||||||| Sbjct 282793 AGAGTTTTCACAAATATTTGCAT 282815 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/134 (77%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 134581 AAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCG 134640 |||||| |||||||| |||||||| |||||||| || ||||||||||| | || | || Sbjct 285229 AAATCAGGCGCTGCTGGTCGGGCGGAATGCCTTCCTTGTCTTGAATTTTGTTCTTCA-CG 285287 Query 134641 CGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTA 134699 | |||| | ||| |||| || || ||||| || || ||||| || || | ||||| Sbjct 285288 TTTTCAATCGAGTCCGACGGCTCGACTTCGAGCGTGATCGTTTTTCCCGTGAGTGTTTTC 285347 Query 134700 ACGAAAATTTGCAt 134713 |||||||| ||||| Sbjct 285348 ACGAAAATCTGCAT 285361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505387767681160