Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq62 105 6e-18 seq21 84.2 2e-11 >seq62 Length=382019 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| || |||| |||||||| ||||| ||||| | || || || || ||| || Sbjct 284083 TTACCCGCAAAAATAAGACGCTGCTGATCAGGCGGGATGCCTTCCTTGTCTTGGATTTTT 284142 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 | |||| | |||| | ||||| | | ||| |||||||| ||||| | |||||||||| Sbjct 284143 GTCTTCACGTTTTCGATGGTGTCCGATGGTTCCACTTCTAGCGTTATTGTTTTGCCCGTC 284202 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 |||||||| ||||| |||||||| Sbjct 284203 AGAGTTTTGACAAATATTTGCAT 284225 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27103 GTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCT 27162 ||||||||||| | ||||||||||| || || || || | ||||||||| || ||| | Sbjct 284365 GTTTACCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATACCCTCTTTGTCTTGGATTT 284424 Query 27163 TGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCG 27222 | ||||| | || | ||||| | | ||| ||||| || || |||| ||| || | Sbjct 284425 TTGCTTTCACATTCTCAATGGTGTCGGACGGTTCCACTTCGAGCGTAATAGTTTTTCCGG 284484 Query 27223 TCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || ||||| |||||||| Sbjct 284485 TCAACGTCTTGACAAATATTTGCAT 284509 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27102 TGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATC 27161 || ||||| || | || || |||||||| ||||| || | |||||| || || ||| Sbjct 283228 TGCTTACCAGCAAAGATCAGCCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATC 283287 Query 27162 TTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCC 27221 || | |||| | |||| | || || | | ||| ||||| || || || | ||| || Sbjct 283288 TTCGTCTTCACGTTTTCGATCGTATCGGACGGTTCCACTTCGAGCGTGATCGTTTTCCCG 283347 Query 27222 GTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||||||||||||||| || ||||| Sbjct 283348 GTCAGAGTTTTCACAAAAATCTGCAT 283373 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| || | || | ||||||||||||||||| | |||||||| || || || Sbjct 283801 TTACCAGCAAATATTAACCGCTGTTGATCCGGCGGGATGCCCTCTTTGTCCTGTATTTTA 283860 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 |||||| |||| | |||||| | | ||| ||||| || || || | ||| || || Sbjct 283861 GTTTTCACATTTTCAATAGTGTCGGACGGTTCCACTTCGAGCGTGATTGTTTTTCCAGTG 283920 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 || ||||| ||||| |||||||| Sbjct 283921 AGCGTTTTAACAAATATTTGCAT 283943 >seq21 Length=749496 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 131366 CAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGA 131425 ||||| | || || |||| ||||||||| || ||| || |||||||| ||||||||| Sbjct 57281 CAATATTCCACTATCTCGGTGCACAAATTTGAGCACTTAATCGTGCCCAAGTTTTGTTGA 57340 Query 131426 TT-GCTTTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTG 131484 || | |||| | | || | ||||||||| | |||| | || |||||||| |||| ||| Sbjct 57341 TTCGATTTTCGGTTGCA-AGCGTCCTTGTAAACCATGAACGGAGTGCCCGTCTCGATTTG 57399 Query 131485 AGTTTCAATAATG 131497 | ||||| ||| Sbjct 57400 CGACTCAATTATG 57412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424925683931496