Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq62 127 6e-24 seq55 95.1 4e-14 seq83 91.5 4e-13 >seq62 Length=382019 Score = 127 bits (140), Expect = 6e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||| ||||||||||| || ||||| || |||||||| || ||||| ||||| || | Sbjct 284654 CCAGCGAAGATTAGACGCTGTTGATCGGGTGGAATTCCCTCCTTATCTTGAATCTTCGTC 284713 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || |||||||| | || || || ||||| || || |||| ||||| ||||||| | Sbjct 284714 TTCACGTTATCAATAGTGTCGGAAGGCTCAACCTCCAGCGTAATAGTCTTGCCGGTTAAT 284773 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||||||||| |||||||| Sbjct 284774 GTTTTTACAAAGATCTGCAT 284793 Score = 123 bits (136), Expect = 8e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| |||| ||||||||| ||||||||||| || || || || |||||||| | Sbjct 283517 CCGGCAAAAATTAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGAATTTTCGTC 283576 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | ||| || || || ||||| ||||| | |||||| ||||| | Sbjct 283577 TTCACATTTTCAATGGTATCCGAAGGCTCCACTTCCAGTGTTATTGTCTTACCGGTCAAC 283636 Query 140718 GTTTTTACAAAAATCTGCATT 140738 ||||| ||||| ||||||||| Sbjct 283637 GTTTTCACAAAGATCTGCATT 283657 Score = 113 bits (124), Expect = 1e-19 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 140591 TTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAAT 140650 ||| || ||||||||||| || || || || || |||||||| || || || |||||||| Sbjct 283227 TTGCTTACCAGCAAAGATCAGCCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAAT 283286 Query 140651 TTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCC 140710 || | || || || || |||| ||| || ||||| ||||| || || | || || || Sbjct 283287 CTTCGTCTTCACGTTTTCGATCGTATCGGACGGTTCCACTTCGAGCGTGATCGTTTTCCC 283346 Query 140711 GGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || ||||| |||||||||||||| Sbjct 283347 GGTCAGAGTTTTCACAAAAATCTGCAT 283373 Score = 111 bits (122), Expect = 5e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| |||| ||| ||||| |||||||||||||| ||||| || || ||||| | | Sbjct 282394 CCGGCAAAAATTAAACGCTGCTGGTCAGGAGGAATTCCCTCTTTGTCTTGTATTTTCGTT 282453 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || |||||||| || | || || || || |||||||| |||| || || || || | Sbjct 282454 TTCACATTATCGATTGTGTCCGACGGCTCCACTTCAAGGGTAATCGTTTTACCAGTCAAC 282513 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || ||||| ||||||||| Sbjct 282514 GTCTTCACAAATATCTGCATT 282534 Score = 104 bits (114), Expect = 7e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| |||| || |||||||| || || || ||||| || || |||||||||||| Sbjct 282956 CCGGCAAAAATTAAGCGCTGCTGATCTGGTGGTATGCCTTCCTTGTCTTGAATTTTAGCT 283015 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || ||||||| ||| || ||||| || || | || | ||||| ||||||| Sbjct 283016 TTCACGTTCTCAATCGTATCTGACGGTTCGACCTCCAAAGTGATCGTCTTCCCGGTTAAA 283075 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || || || ||||| Sbjct 283076 GTTTTGACGAATATTTGCAT 283095 Score = 100 bits (110), Expect = 9e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||||||||| || || ||||| ||||| || || |||||||| |||||||||||||| Sbjct 284934 CCAGCAAAGATCAGTCGCTGCTGGTCAGGCGGTATGCCTTCTTTGTCCTGAATTTTAGCC 284993 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || || | || || || ||||| || || | || | || ||||| || | Sbjct 284994 TTCACGTTCTCCACCGTGTCCGACGGTTCCACCTCCAAAGTTATCGTTTTTCCCGTCAAC 285053 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || || ||||||||||| Sbjct 285054 GTCTTCACGAAAATCTGCAT 285073 Score = 96.9 bits (106), Expect = 1e-14 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || ||||| || ||||| ||||||||||| || || ||||| || || || ||||| Sbjct 284083 TTACCCGCAAAAATAAGACGCTGCTGATCAGGCGGGATGCCTTCCTTGTCTTGGATTTTT 284142 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 | || || || || || | || |||||||| ||||| || || | ||| || || || Sbjct 284143 GTCTTCACGTTTTCGATGGTGTCCGATGGTTCCACTTCTAGCGTTATTGTTTTGCCCGTC 284202 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || ||||| ||||| || ||||| Sbjct 284203 AGAGTTTTGACAAATATTTGCAT 284225 Score = 95.1 bits (104), Expect = 4e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||| | || || || ||||| || || ||||| ||||| || || |||||||| Sbjct 285222 CCAGCGTAAATCAGGCGCTGCTGGTCGGGCGGAATGCCTTCCTTGTCTTGAATTTTGTTC 285281 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || |||||||| || || || || ||||| || || | || ||||| || ||| Sbjct 285282 TTCACGTTTTCAATCGAGTCCGACGGCTCGACTTCGAGCGTGATCGTTTTTCCCGTGAGT 285341 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || ||||||||||| Sbjct 285342 GTTTTCACGAAAATCTGCAT 285361 >seq55 Length=397027 Score = 95.1 bits (104), Expect = 4e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || || ||||| || | || ||||| ||||||| ||||||||||| ||| Sbjct 87312 ATACCCTCCTTGTCTTGAATCTTCGTCTTCACATTTTCAATCGTGTCAGATGGTTCCACT 87371 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || | || | ||||||||||||||| ||||| ||||| |||||||| Sbjct 87372 TCCAAAGTGATTGTCTTTCCGGTTAGCGTTTTAACAAATATCTGCAT 87418 >seq83 Length=331226 Score = 91.5 bits (100), Expect = 4e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 266972 AATCGGCGATAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTATTCC 267031 ||| ||||| |||||| | ||| | || || ||||| ||||||||||||| || | | Sbjct 25147 AATGGGCGACAAATTTGCCAGTAGACATGGTCAAAAGGGTACCATTGGTATGA-CGTACA 25205 Query 267032 TG-AAGAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTC 267090 | | ||| ||||||| |||| || || |||| |||||||| || || ||||| | Sbjct 25206 GGCAGGAAGATATGCCGTTTACGTGCGAAGGTATTACGCCTGATATAATCATCAATCCGC 25265 Query 267091 ATGCTATTCCTAGTCGTATGACAATTGGTCAATT 267124 | || || |||||||| ||||| ||||| || || Sbjct 25266 ACGCCATACCTAGTCGAATGACCATTGGCCATTT 25299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515221725906449