Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq69 87.8 2e-12 >seq69 Length=365491 Score = 87.8 bits (96), Expect = 2e-12 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG-CTATTTTCTGGCT 60049 || ||||| ||| || || || |||||||| || ||| || | || |||||||| Sbjct 157004 GCGTTTGCTGCCGTCGAGGGCATATTCTTCTCGGGAA-GTTTTGCCTCGATATTCTGGCT 156946 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 || ||||| ||||||||||| ||||||| ||| ||||||||| || ||||||||||| Sbjct 156945 AAAGAAGCGCGGCCTCATGCCCGGCCTGACGTTCAGCAACGAGCTCATATCCCGGGACGA 156886 Query 60110 GG 60111 || Sbjct 156885 GG 156884 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 59612 TTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCT 59671 |||||| ||| ||||||||||| | ||||| | | ||| ||| |||||||| || | Sbjct 157442 TTCATTTTGGACCGTCGAGGAGGTGGACCTGAGCAGGGACATGACCGATTGGGAGAAATT 157383 Query 59672 CAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGG 59731 || | ||||| |||| |||||| | || ||||||||||||||||| || || Sbjct 157382 GAACGCCAACGAGAAGCACTTCATCTCGTACGTGCTGGCCTTCTTCGCGGCCTCCGACGG 157323 Query 59732 AATTGTGATGGAAAAT 59747 ||| ||| | |||||| Sbjct 157322 AATAGTGTTTGAAAAT 157307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548513260409520