Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq30 127 2e-24 seq38 100 3e-16 >seq30 Length=610381 Score = 127 bits (140), Expect = 2e-24 Identities = 284/423 (67%), Gaps = 4/423 (1%) Strand=Plus/Plus Query 151879 GTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAACTCC 151938 |||||||| || || || |||||||||| || |||||| ||||| ||| || | || Sbjct 127564 GTACCGATCCCTTCAGCGCCGTTGACCAAAACCATCGGTACAATTGGGCAATACCATTCG 127623 Query 151939 GGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGATCG 151998 || || | || |||| ||||| | | | || | | || | || || | | Sbjct 127624 GGTTCAATCTTTTGATTATCATCAAAGAGATGGTTGAGACAGGCCTCATCCTCCTGGGGG 127683 Query 151999 AATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCC 152058 || | | | || || || | ||| ||||||||||| || | || || || ||| Sbjct 127684 AACAACGCCTTTGCAATTGGGCTGAGACGAGTGAAGATGTAACGCGCACTAGCGGCGTCC 127743 Query 152059 TTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTG 152118 ||||| || ||| || || ||||| || || ||| || ||||| | ||||||| Sbjct 127744 TTGCCGCCCATCAGACGGGTGCCAAATTGGCCGATCGGCATCAGCAGGTTAATGTTGTTG 127803 Query 152119 GCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGG 152178 || ||||| || || |||||||| |||||||| | || ||| |||| ||||| Sbjct 127804 CTTCCGACGAAGTTGTGCGCCAAATTGACAATCGTTGACATTAGGCTCACTTCGCCGTGA 127863 Query 152179 TGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC-CG-TCG 152236 || || || | | ||| || || | || |||| ||| || ||||||| || || | | Sbjct 127864 TGGTATGCGGACATCTCGGCAATCGAGCCGGCCAGCTGGGCAACCTTCACTTCGCGCTTG 127923 Query 152237 TCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCA 152296 ||| || ||||| |||| | | | |||||| ||||| || ||||||||||||| Sbjct 127924 TCA--TTTCGCTTGAAGCAGGTGAACAGCACCTTCCGCTGTCCCGGCTTCAAACCGTCCA 127981 Query 152297 CCA 152299 ||| Sbjct 127982 CCA 127984 Score = 127 bits (140), Expect = 2e-24 Identities = 199/281 (71%), Gaps = 8/281 (3%) Strand=Plus/Plus Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358 || |||||||| |||||||| | || || || |||||||| || ||||| || || Sbjct 127708 AGACGAGTGAAGATGTAACGCGCACTAGCGGCGTCCTTGCCGCCCATCAGACGGGTGCCA 127767 Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418 ||||| || ||||| || ||||| | ||||||| || || ||||| || ||||| Sbjct 127768 AATTGGCCGATCGGCATCAGCAGGTTAATGTTGTTGCTTCCGACGAAGTTGTGCGCCAAA 127827 Query 117419 TTGACAATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCA 117476 ||||||||||| || || |||||| | || || || || || || | | ||| || | Sbjct 127828 TTGACAATCGTTGACATT--AGGCTCACTTCGCCGTGATGGTATGCGGACATCTCGGCAA 127885 Query 117477 CGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGAC--GTCAGGTTCTTCTTGAGGCAGGC 117534 |||| |||||||| || ||||||| || | |||| || ||||| ||||| Sbjct 127886 TCGAGCCGGCCAGCTGGGCAACCTTCACTTCGCGCTTGTCA--TTTCGCTTGAAGCAGGT 127943 Query 117535 ATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCA 117575 | | |||||| ||||| | ||||||| ||| ||| ||| Sbjct 127944 GAACAGCACCTTCCGCTGTCCCGGCTTCAAACCGTCCACCA 127984 >seq38 Length=545037 Score = 100 bits (110), Expect = 3e-16 Identities = 186/271 (69%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| ||||||| | || || |||||||||||||| ||| || || |||||||| Sbjct 422444 GTGAAAATGTATCTTGCACTAGCAGCATCCTTGCCACCCTGCAGGCGAGTACCAAACTGG 422503 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| || || | |||| |||||| ||| || || | || |||||||| | | Sbjct 422504 CCAATAGGTAACAGTAAATTGATATTGTTGCTGCCAACAAAGTCATGTGCCAAATTAATA 422563 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || || ||| || || ||||| || ||||||||||| | | || || | | | || Sbjct 422564 ATAGTTCCCATAAGGCTTGCTTCCCCATGGTGATACGCTGACATTTCAGCAACGGAACCG 422623 Query 152209 GCCAACTGCGCCACCTTCA--TGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCA 152266 |||||||| || ||||||| | || | |||| || ||||| ||||| | | | | Sbjct 422624 GCCAACTGGGCTACCTTCACTTCTCGCTTGTCA--TTACGCTTGAAACAGGTGAACAGTA 422681 Query 152267 CCTTGCGCTGGGATGGTTTCAAACCGTCCAC 152297 | || || || ||||| | ||| ||||| Sbjct 422682 CTTTTCGTTGTCCCGGTTTTAGACCATCCAC 422712 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||||||||| | | || ||||||||||||||||| || || ||||| || || Sbjct 422444 GTGAAAATGTATCTTGCACTAGCAGCATCCTTGCCACCCTGCAGGCGAGTACCAAACTGG 422503 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || || | || | |||||| ||| ||||||| || ||||| || | | Sbjct 422504 CCAATAGGTAACAGTAAATTGATATTGTTGCTGCCAACAAAGTCATGTGCCAAATTAATA 422563 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || || ||||| || || |||||||||||||| | | || || ||| | || Sbjct 422564 ATAGTTCCCATAAGGCTTGCTTCCCCATGGTGATACGCTGACATTTCAGCAACGGAACCG 422623 Query 117485 GCCAGCTGAGCCACCTTCA 117503 |||| ||| || ||||||| Sbjct 422624 GCCAACTGGGCTACCTTCA 422642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547204487943400