Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq62 132 5e-26 seq21 98.7 1e-15 seq30 89.7 6e-13 >seq62 Length=382019 Score = 132 bits (146), Expect = 5e-26 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| || ||| | ||||| ||||| || || || || || ||| | Sbjct 283657 AATGCAGATCTTTGTGAAAACGTTGACCGGTAAGACAATAACACTGGAAGTGGAGCCTTC 283598 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||||| |||| ||||| | |||||||| ||||||||||| |||||||| ||||| Sbjct 283597 GGATACCATTGAAAATGTGAAGACGAAAATTCAAGACAAGGAGGGCATTCCTCCTGACCA 283538 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||| |||||||||| |||| Sbjct 283537 GCAACGTTTAATTTTTGCCGGTA 283515 Score = 116 bits (128), Expect = 4e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| |||||||||||| | ||||| || |||||||| || || || || | Sbjct 284510 AATGCAAATATTTGTCAAGACGTTGACCGGAAAAACTATTACGCTCGAAGTGGAACCGTC 284451 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| |||| || ||||| || ||||| ||||| ||||| || ||||| Sbjct 284450 CGACACCATTGAGAATGTGAAAGCAAAAATCCAAGACAAAGAGGGTATTCCACCTGACCA 284391 Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548 ||||||||| || || || ||||| Sbjct 284390 GCAGCGTCTCATCTTCGCCGGTAA 284367 Score = 116 bits (128), Expect = 4e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || | ||||||||||||||||| || ||||||||| | Sbjct 284793 ATGCAGATCTTTGTAAAAACATTAACCGGCAAGACTATTACGCTGGAGGTTGAGCCTTCC 284734 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||| | || ||||| || |||||||||||||| || || || Sbjct 284733 GACACTATTGATAACGTGAAGACGAAGATTCAAGATAAGGAGGGAATTCCACCCGATCAA 284674 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||||||||| || ||||||| Sbjct 284673 CAGCGTCTAATCTTCGCTGGTA 284652 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| |||||| | || || || || ||||| ||||| || ||| | Sbjct 282534 AATGCAGATATTTGTGAAGACGTTGACTGGTAAAACGATTACCCTTGAAGTGGAGCCGTC 282475 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| |||| | ||||| || ||||| |||||||||||||| ||||| Sbjct 282474 GGACACAATCGATAATGTGAAAACGAAAATACAAGACAAAGAGGGAATTCCTCCTGACCA 282415 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||||||| |||||||||| |||| Sbjct 282414 GCAGCGTTTAATTTTTGCCGGTA 282392 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || || || || ||||| || ||||| || || ||| | | Sbjct 282815 ATGCAAATATTTGTGAAAACTCTAACTGGAAAGACCATCACTCTGGAAGTGGAGCCTTCT 282756 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||||| || ||||| ||||| ||||| || || ||||| ||| Sbjct 282755 GATACTATAGAGAATGTCAAGGCGAAGATTCAAGACAAAGAGGGTATCCCACCAGATCAG 282696 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| | ||||||||||||||| Sbjct 282695 CAGCGGTTGATTTTTGCTGGTAAG 282672 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || || ||||| || || || || || || || || | Sbjct 283373 ATGCAGATTTTTGTGAAAACTCTGACCGGGAAAACGATCACGCTCGAAGTGGAACCGTCC 283314 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||| | || ||||||||||||||||| |||||||| ||||| Sbjct 283313 GATACGATCGAAAACGTGAAGACGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAA 283254 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||||| || || ||||||||||||||| Sbjct 283253 CAGCGGCTGATCTTTGCTGGTAAGCAA 283227 Score = 105 bits (116), Expect = 8e-18 Identities = 111/145 (77%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTCA 27462 |||||||| || ||||| || | ||||| ||||| || ||| | ||||| || |||| Sbjct 283095 ATGCAAATATTCGTCAAAACTTTAACCGGGAAGACGATCACTTTGGAGGTCGAACCGTCA 283036 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | ||| |||| || |||| ||||||||||| |||||||| || || || ||||| Sbjct 283035 G---ATACGATTGAGAACGTGAAAGCTAAAATTCAAGACAAGGAAGGCATACCACCAGAT 282979 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTA 27547 |||||||| |||||||||| |||| Sbjct 282978 CAGCAGCGCTTAATTTTTGCCGGTA 282954 Score = 102 bits (112), Expect = 9e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||| || || || ||||| || || || || || || || || Sbjct 284225 ATGCAAATATTTGTCAAAACTCTGACGGGCAAAACAATAACGCTAGAAGTGGAACCATCG 284166 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||| | ||||| || |||||||| || || || || || ||| Sbjct 284165 GACACCATCGAAAACGTGAAGACAAAAATCCAAGACAAGGAAGGCATCCCGCCTGATCAG 284106 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 |||||||| |||||||| |||||| Sbjct 284105 CAGCGTCTTATTTTTGCGGGTAAG 284082 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || ||||| || || || || || || || || || || | Sbjct 283943 ATGCAAATATTTGTTAAAACGCTCACTGGAAAAACAATCACGCTCGAAGTGGAACCGTCC 283884 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| |||| ||||||| |||||||| ||||| || || || || || Sbjct 283883 GACACTATTGAAAATGTGAAAACTAAAATACAGGACAAAGAGGGCATCCCGCCGGATCAA 283824 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| |||| |||||||||||| Sbjct 283823 CAGCGGTTAATATTTGCTGGTAAG 283800 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || |||||| | || || || || || ||| | ||||| || | Sbjct 285073 ATGCAGATTTTCGTGAAGACGTTGACGGGAAAAACGATAACTTTGGAGGTGGAACCGTCG 285014 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | | | || |||||||||||||||||||||| || || || || || |||||| Sbjct 285013 GACACGGTGGAGAACGTGAAGGCTAAAATTCAGGACAAAGAAGGCATACCGCCTGACCAG 284954 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| || || ||||||||| || Sbjct 284953 CAGCGACTGATCTTTGCTGGTGAG 284930 >seq21 Length=749496 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009 || || || || ||||||||||| || ||||||| || |||| ||||| || || || Sbjct 57287 TCCACTATCTCGGTGCACAAATTTGAGCACTTAATCGTGCCCAAGTTTTGTTGATTCGAT 57346 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 || |||||||||||||||||| |||| |||| || || ||||||| || |||| Sbjct 57347 TTTCGGTTGCAAGCGTCCTTGTAAACCATGAACGGAGTGCCCGTCTCGATTTGCGACTCA 57406 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTT 81098 | ||||||| ||||| | ||||||| Sbjct 57407 ATTATGGCGTACCAAAGTTGCTGCGCCTT 57435 Score = 84.2 bits (92), Expect = 2e-11 Identities = 129/181 (71%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 80069 CCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCA-AGTGTGG--GGTTCTCCA 80125 |||| ||||||||||| | ||||| ||| | | ||| || ||| ||| || ||| Sbjct 54648 CCTTTTTCCAGCCGTAAAAATGCATCGAAGTAATCTTGCCATAGTTTGGACGGG---CCA 54704 Query 80126 TGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCAA 80185 || || ||||| || || |||||| | ||||||||||||||| || ||||| || | Sbjct 54705 TGTGTATATTCAGCGATTGCGACTGATCAACGAAAGCCCCACGATCGGCAGCCATGTCGA 54764 Query 80186 TAATTGACTTTTGTGGAATTTCCCATACTGTACGATACACCTTACGAAGCTCCTCTGGAA 80245 | || |||||| | ||||||||| || || |||| || || | ||| || |||| Sbjct 54765 TGATCACCTTTTGCGAAATTTCCCACACCGTTTTGTACAACTCGCGTATCTCTTCAGGAA 54824 Query 80246 T 80246 | Sbjct 54825 T 54825 >seq30 Length=610381 Score = 89.7 bits (98), Expect = 6e-13 Identities = 191/281 (68%), Gaps = 6/281 (2%) Strand=Plus/Minus Query 31979 TGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACC 32038 ||| |||||| | ||||| |||||| |||||| | | | ||||| ||||| || Sbjct 127984 TGGTGGACGGTTTGAAGCCGGGACAGCGGAAGGTGCTGTTCACCTGCTTCAAGCGAAA-- 127927 Query 32039 TGTCGAGTGACA--TGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTA 32096 || | || | | ||||||| || |||||| | |||| | || ||| | || || Sbjct 127926 TGACAAGCGCGAAGTGAAGGTTGCCCAGCTGGCCGGCTCGATTGCCGAGATGTCCGCATA 127867 Query 32097 TCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGG 32156 || |||||||| | | || | || |||||||| | || || ||||| ||||| Sbjct 127866 CCATCACGGCGAAGTGAGCCTAATGTCAACGATTGTCAATTTGGCGCACAACTTCGTCGG 127807 Query 32157 TGCAAATAACCTGAACTTACTCGAGCC-ATCTGGACAGTTTGGGACCCGGCTCGCCGGTG 32215 || ||| | ||| | || ||| ||| || || ||||| ||||| || || | Sbjct 127806 AAGCAACAACATTAACCTGCTGATGCCGATC-GGCCAATTTGGCACCCGTCTGATGGGCG 127748 Query 32216 GCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTC 32256 ||||||| || || || | |||||||||||||| |||||| Sbjct 127747 GCAAGGACGCCGCTAGTGCGCGTTACATCTTCACTCGTCTC 127707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570298402094960