Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq62 111 1e-19 >seq62 Length=382019 Score = 111 bits (122), Expect = 1e-19 Identities = 112/143 (78%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 34565 TACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTT 34624 |||||||||| ||||||||||| ||||| || || | |||||| |||||| || ||| Sbjct 282392 TACCGGCAAAAATTAAACGCTGCTGGTCAGGAGGAATTCCCTCTTTGTCTTGTAT-TTTC 282450 Query 34625 GTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTT 34683 ||||| || || |||||||| ||||||||| | ||| ||||||||||| || Sbjct 282451 GTTTTCACATTATCGATTGTGTCCGACGGCTCCACTTCAAGGGTAATCGTTTTACCAGTC 282510 Query 34684 AACGTTTTCACAAAAATCTGCAT 34706 ||||| |||||||| |||||||| Sbjct 282511 AACGTCTTCACAAATATCTGCAT 282533 Score = 102 bits (112), Expect = 5e-17 Identities = 110/143 (77%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 34565 TACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTT 34624 |||||||||| |||||||| || ||||| || || | |||||||||||| ||| ||| Sbjct 283515 TACCGGCAAAAATTAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCT-TGAATTTTC 283573 Query 34625 GTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTT 34683 || || || | ||| || || ||||||||||| ||||| || |||||||| Sbjct 283574 GTCTTCACATTTTCAATGGTATCCGAAGGCTCCACTTCCAGTGTTATTGTCTTACCGGTC 283633 Query 34684 AACGTTTTCACAAAAATCTGCAT 34706 |||||||||||||| |||||||| Sbjct 283634 AACGTTTTCACAAAGATCTGCAT 283656 Score = 86.0 bits (94), Expect = 4e-12 Identities = 112/150 (75%), Gaps = 4/150 (3%) Strand=Plus/Plus Query 34560 TTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGAT 34619 ||| ||||| ||||| || | |||||||||||||| || | ||||||||||| || Sbjct 283227 TTGCTTACCAGCAAAGATCAGCCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAAT 283286 Query 34620 CTTTTGTTTTAACGATAAA-ATTGTGTCTT-CGCTCTCCACTTCCACGGTTATCGTTTTA 34677 ||| || || ||| | || || || || | |||||||| | || |||||||| Sbjct 283287 CTTC-GTCTTCACGTTTTCGATCGTATCGGACGGT-TCCACTTCGAGCGTGATCGTTTTC 283344 Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| | ||||||||||||||||||||| Sbjct 283345 CCGGTCAGAGTTTTCACAAAAATCTGCATG 283374 Score = 86.0 bits (94), Expect = 4e-12 Identities = 112/147 (76%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGT-CTGTGATCTT 34622 ||||| ||||||||||| |||||||| |||||||| | ||||| |||| |||| || || Sbjct 283801 TTACCAGCAAATATTAACCGCTGTTGATCCGGCGGGATGCCCTCTTTGTCCTGT-AT-TT 283858 Query 34623 TTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCG 34680 | ||||| || | ||| ||||| || | |||||||| | || || ||||| || Sbjct 283859 TAGTTTTCACATTTTCAATAGTGTCGGACGGT-TCCACTTCGAGCGTGATTGTTTTTCCA 283917 Query 34681 GTTAACGTTTTCACAAAAATCTGCATG 34707 || | |||||| ||||| || |||||| Sbjct 283918 GTGAGCGTTTTAACAAATATTTGCATG 283944 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 ||||||||||||||||| ||||| || || |||||||||||||| || || || || || Sbjct 284523 CGCAACACCAAATGGAGCGTGCTTTCTTTCTGAATGTTATAATCGGACAGCGTGCGTCCG 284582 Query 34552 TCTTCAAGTTGTTTACC 34568 ||||| |||||||| || Sbjct 284583 TCTTCCAGTTGTTTGCC 284599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314723144404139