Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq62 131 1e-25 seq55 86.0 5e-12 >seq62 Length=382019 Score = 131 bits (144), Expect = 1e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| || || ||||||| || ||||||| || ||||||||||||||| Sbjct 284509 ATGCAAATATTTGTCAAGACGTTGACCGGAAAAACTATTACGCTCGAAGTGGAACCGTCC 284450 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| |||||| ||||||||||| || || ||||| || || Sbjct 284449 GACACCATTGAGAATGTGAAAGCAAAAATCCAAGACAAAGAGGGTATTCCACCTGACCAG 284390 Query 27108 CAGCGTTTAATATACGCCGGCAAAC 27132 |||||| | || | |||||| |||| Sbjct 284389 CAGCGTCTCATCTTCGCCGGTAAAC 284365 Score = 125 bits (138), Expect = 6e-24 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || |||||| ||||| || |||||| | ||||| ||| | || ||| | || || ||||| Sbjct 283099 CGGCATGCAAATATTCGTCAAAACTTTAACCGGGAAGACGATCACTTTGGAGGTCGAACC 283040 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||| || ||||||||| || ||| |||||||||||||| |||||||||||||| || Sbjct 283039 GTCAGATACGATTGAGAACGTGAAAGCTAAAATTCAAGACAAGGAAGGCATACCACCAGA 282980 Query 27104 TCAACAGCGTTTAATATACGCCGG 27127 ||| ||||| ||||| | ||||| Sbjct 282979 TCAGCAGCGCTTAATTTTTGCCGG 282956 Score = 116 bits (128), Expect = 3e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || |||||| |||||||| ||||| || || || || | || || || ||||||||||| Sbjct 283947 CGGCATGCAAATATTTGTTAAAACGCTCACTGGAAAAACAATCACGCTCGAAGTGGAACC 283888 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||||||| | ||||| | || ||| ||||| || |||||||| ||||| || || || Sbjct 283887 GTCCGACACTATTGAAAATGTGAAAACTAAAATACAGGACAAAGAGGGCATCCCGCCGGA 283828 Query 27104 TCAACAGCGTTTAATAT 27120 ||||||||| ||||||| Sbjct 283827 TCAACAGCGGTTAATAT 283811 Score = 114 bits (126), Expect = 1e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||||||||| | ||||||||| ||||||| || || || || || || Sbjct 284794 CATGCAGATCTTTGTAAAAACATTAACCGGCAAGACTATTACGCTGGAGGTTGAGCCTTC 284735 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||| | || || || |||||||| || || || || ||||||||||| Sbjct 284734 CGACACTATTGATAACGTGAAGACGAAGATTCAAGATAAGGAGGGAATTCCACCCGATCA 284675 Query 27107 ACAGCGTTTAATATACGCCGG 27127 ||||||| |||| | ||| || Sbjct 284674 ACAGCGTCTAATCTTCGCTGG 284654 Score = 109 bits (120), Expect = 5e-19 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || |||||| |||||||| ||||||||||| ||||| | || || || ||||||||||| Sbjct 284229 CGGCATGCAAATATTTGTCAAAACTCTGACGGGCAAAACAATAACGCTAGAAGTGGAACC 284170 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| | || || | || || |||||| |||||||| |||||||| || || || Sbjct 284169 ATCGGACACCATCGAAAACGTGAAGACAAAAATCCAAGACAAGGAAGGCATCCCGCCTGA 284110 Query 27104 TCAACAGCGT 27113 ||| |||||| Sbjct 284109 TCAGCAGCGT 284100 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 ||||||||||| || || ||||| || || || || | || || || ||||| || ||| Sbjct 285364 GCCATGCAGATTTTCGTGAAAACACTCACGGGAAAAACGATCACGCTCGAAGTCGAGCCG 285305 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || ||||||||||| | || || | |||||||||||||| |||||||| || ||||| Sbjct 285304 TCGGACTCGATTGAAAACGTGAAGAACAAAATTCAAGACAAGGAAGGCATTCCGCCCGAC 285245 Query 27105 CAACAGCGTTTAATATACGCCGG 27127 || ||||| | || ||||| || Sbjct 285244 CAGCAGCGCCTGATTTACGCTGG 285222 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || |||| || || | ||||| ||||||||||| ||||| Sbjct 282533 ATGCAGATATTTGTGAAGACGTTGACTGGTAAAACGATTACCCTTGAAGTGGAGCCGTCG 282474 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| ||||| ||||||||||| || || || || || || Sbjct 282473 GACACAATCGATAATGTGAAAACGAAAATACAAGACAAAGAGGGAATTCCTCCTGACCAG 282414 Query 27108 CAGCGTTTAATATACGCCGG 27127 ||||||||||| | ||||| Sbjct 282413 CAGCGTTTAATTTTTGCCGG 282394 Score = 102 bits (112), Expect = 7e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| |||||||| || || ||| | || ||||| |||||||| || || Sbjct 282815 ATGCAAATATTTGTGAAAACTCTAACTGGAAAGACCATCACTCTGGAAGTGGAGCCTTCT 282756 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| ||||| || |||||||||||||| || || ||||| ||||| Sbjct 282755 GATACTATAGAGAATGTCAAGGCGAAGATTCAAGACAAAGAGGGTATCCCACCAGATCAG 282696 Query 27108 CAGCGTTTAAT 27118 ||||| || || Sbjct 282695 CAGCGGTTGAT 282685 Score = 98.7 bits (108), Expect = 9e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| |||||||||||||| || | || || || |||||||||||||| Sbjct 283374 CATGCAGATTTTTGTGAAAACTCTGACCGGGAAAACGATCACGCTCGAAGTGGAACCGTC 283315 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | || || || ||||| ||||| || || || || || || || Sbjct 283314 CGATACGATCGAAAACGTGAAGACGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCA 283255 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAAT 27135 |||||| | || | || || || |||| Sbjct 283254 ACAGCGGCTGATCTTTGCTGGTAAGCAAT 283226 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| ||||||| ||| | || || || |||||||| || || Sbjct 283656 ATGCAGATCTTTGTGAAAACGTTGACCGGTAAGACAATAACACTGGAAGTGGAGCCTTCG 283597 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || |||||||||||||| || ||||| || || || || Sbjct 283596 GATACCATTGAAAATGTGAAGACGAAAATTCAAGACAAGGAGGGCATTCCTCCTGACCAG 283537 Query 27108 CAGCGTTTAATATACGCCGG 27127 || |||||||| | ||||| Sbjct 283536 CAACGTTTAATTTTTGCCGG 283517 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| || || | || ||| | || ||||||||||| Sbjct 285074 CATGCAGATTTTCGTGAAGACGTTGACGGGAAAAACGATAACTTTGGAGGTGGAACCGTC 285015 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| || | |||| || || |||||||| ||||||||||||||||| || || || Sbjct 285014 GGACACGGTGGAGAACGTGAAGGCTAAAATTCAGGACAAAGAAGGCATACCGCCTGACCA 284955 Query 27107 ACAGCG 27112 ||||| Sbjct 284954 GCAGCG 284949 >seq55 Length=397027 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||| || ||||| ||| | || ||| | ||||||||||| || Sbjct 87418 ATGCAGATATTTGTTAAAACGCTAACCGGAAAGACAATCACTTTGGAAGTGGAACCATCT 87359 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCAT 27094 ||| ||||||| | || || || ||||||||||| || || || Sbjct 87358 GACACGATTGAAAATGTGAAGACGAAGATTCAAGACAAGGAGGGTAT 87312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434909250404160