Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq62 113 3e-20 >seq62 Length=382019 Score = 113 bits (124), Expect = 3e-20 Identities = 113/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || |||||||| ||||| |||||||| ||||| |||||||| || | | Sbjct 283943 ATGCAAATATTTGTTAAAACGCTCACTGGAAAAACAATCACGCTCGAAGTGGAACCGTCC 283884 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| | | ||||| |||| | |||||||| || | ||||| ||||| Sbjct 283883 GACACTATTGAAAATGTGAAAACTAAAA-TACAGGACAAAGAGGGCATCCCGCCGGATCA 283825 Query 23730 ACAGCGTTTAATATTTGCCGGCAA 23753 |||||| ||||||||||| || || Sbjct 283824 ACAGCGGTTAATATTTGCTGGTAA 283801 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| |||||||||||||||||||| |||||||| || | || Sbjct 285361 ATGCAGATTTTCGTGAAAACACTCACGGGAAAAACGATCACGCTCGAAGTCGAGCCGTCG 285302 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | |||||| | || | |||||| ||||| ||||| | ||||| || || Sbjct 285301 GACTCGATTGAAAACGTGAAGAACAAAATTCAAGACAAGGAAGGCATTCCGCCCGACCAG 285242 Query 23731 CAGCG 23735 ||||| Sbjct 285241 CAGCG 285237 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | |||||||||||||| ||| | || || || | || Sbjct 285073 ATGCAGATTTTCGTGAAGACGTTGACGGGAAAAACGATAACTTTGGAGGTGGAACCGTCG 285014 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| || || | | || |||||| ||||||||||| ||||||| || || Sbjct 285013 GACACGGTGGAGAACGTGAAGGCTAAAATTCAGGACAAAGAAGGCATACCGCCTGACCAG 284954 Query 23731 CAGCGTTTAATATTTGCCGG 23750 ||||| | || ||||| || Sbjct 284953 CAGCGACTGATCTTTGCTGG 284934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338002666894964