Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq62 120 7e-22 seq362 107 5e-18 >seq62 Length=382019 Score = 120 bits (132), Expect = 7e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || || ||||| || || || || ||||| || ||||||||||||||||| || Sbjct 284082 CTTACCCGCAAAAATAAGACGCTGCTGATCAGGCGGGATGCCTTCCTTGTCTTGGATTTT 284141 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 | |||||| |||||||||||| || | |||||| |||| ||| || || |||||||| Sbjct 284142 TGTCTTCACGTTTTCGATGGTGTCCGATGGTTCCACTTCTAGCGTTATTGTTTTGCCCGT 284201 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 || |||||| | || | |||||| Sbjct 284202 CAGAGTTTTGACAAATATTTGCAT 284225 Score = 102 bits (112), Expect = 2e-16 Identities = 111/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| || || || ||||| || |||||||| || ||||||||||| ||| Sbjct 284367 TTACCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATACCCTCTTTGTCTTGGAT-TTT 284425 Query 225631 TGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| |||||| || |||||||| || | |||||| || | ||| || || || || || Sbjct 284426 TGCTTTCACATTCTCAATGGTGTCGGACGGTTCCACTTCGAGCGTAATAGTTTTTCCGGT 284485 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 ||| || || | || | ||||||| Sbjct 284486 CAACGTCTTGACAAATATTTGCATT 284510 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 |||||| | || || || || |||||||||||||| |||||||||||||| || || | | Sbjct 285222 CCAGCGTAAATCAGGCGCTGCTGGTCGGGCGGAATGCCTTCCTTGTCTTGAATTTTGTTC 285281 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| ||| || | ||| || | || || || | ||||||||| || ||||| | Sbjct 285282 TTCACGTTTTCAATCGAGTCCGACGGCTCGACTTCGAGCGTGATCGTTTTTCCCGTGAGT 285341 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| | ||||| Sbjct 285342 GTTTTCACGAAAATCTGCAT 285361 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||||||||| || || ||||| ||||| ||||| || ||||| ||||| ||||| | Sbjct 284654 CCAGCGAAGATTAGACGCTGTTGATCGGGTGGAATTCCCTCCTTATCTTGAATCTTCGTC 284713 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| || || ||||| || | || || || | ||| || |||||||| || || Sbjct 284714 TTCACGTTATCAATAGTGTCGGAAGGCTCAACCTCCAGCGTAATAGTCTTGCCGGTTAAT 284773 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||||| || | ||||| Sbjct 284774 GTTTTTACAAAGATCTGCAT 284793 >seq362 Length=16740 Score = 107 bits (118), Expect = 5e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| ||||||| ||||| | || || ||||| |||||||| |||||||| | || || Sbjct 2756 CCAAATTTACAATGTTATCGTAACTGCCCATGCTTTTGTTATAATTTTCTTCATAGTAAT 2815 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || | || || || || || ||||| ||| | || || |||| || || || || || Sbjct 2816 ACCAATAATAATTGGAGGCTTTGGAAACTGACTTGTCCCACTAATAATCGGAGCCCCAGA 2875 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 ||| || || ||| | | || ||||||||||||||| | ||||| || || || Sbjct 2876 TATAGCATTCCCACGAATAAATAATATAAGTTTTTGACTCCTACCACCATCATT 2929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192505484928002