Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq69 131 1e-25 seq55 87.8 2e-12 >seq69 Length=365491 Score = 131 bits (144), Expect = 1e-25 Identities = 225/321 (70%), Gaps = 8/321 (2%) Strand=Plus/Plus Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658 ||||| | |||||||| | || | ||| || ||||| ||||| | |||||| || Sbjct 156913 AACGTCAGGCCGGGCATGAGGCCGCGCTTCTTTAGCCAGAATATCGAGGCAAAACTTCCC 156972 Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGC- 4717 || ||||||||||| || ||||| |||||||| || | |||| | ||||| || | Sbjct 156973 GAGAAGAATATGCCCTCGACGGCAGCAAACGCCACCAGTCGGTCGCTGAACG-GCGACCG 157031 Query 4718 TTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTA 4777 | ||| ||||| | ||||||| || || ||||| ||||||||||| || | Sbjct 157032 CTGGTCGGCGATCCAACGCAGAGCCCAGTCGGCCTTCTTCTTGACGCACGGAATGGTCTC 157091 Query 4778 TATAGCGTTAAATA-AT--TTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAG 4834 || ||||| || | || || | | || |||||| || |||||||| || || Sbjct 157092 AATGGCGTTGAACAGATGGTTGCGCTGCTC---GTCGTCTTGTATGTAAGTGTCAATCAG 157148 Query 4835 TAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCT 4894 ||||| |||||||| || || || || || || || || ||||| ||||||||||| | Sbjct 157149 CAGGCTGTACATTTCCGAGTGGATGTTCTCGATGGCTATTTGAAAGCCGTAAAAGCAGCG 157208 Query 4895 AGCTTCTGTTACTTGAACTTC 4915 ||| || || | || ||||| Sbjct 157209 AGCCTCGGTCGCCTGCACTTC 157229 >seq55 Length=397027 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 31778 ACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGA 31837 || || |||||| | ||||||| || |||||||| || |||| || | || || Sbjct 197150 ACTGACATTCAAGTAGCTTTACCCAAGGGTTGCTACGGCCGTGTAGCGCCGCGCTCGGGC 197209 Query 31838 TTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGA 31897 | || ||||| || |||||||| || || || || || ||| || || || ||| Sbjct 197210 CTTGCGGTTAAGCATGGCATCGACGTAGGAGCTGGCGTGATCGATGGCGATTACAGGGGA 197269 Query 31898 AACGTTGGAATTGTGTTGTTTAATTTTGGAGAAAAATCATACAGTATAAAAAAGGGCGAT 31957 ||||| || |||| ||||| || ||||| || | || | | |||| ||| ||| Sbjct 197270 AACGTCGGCGTTGTATTGTTCAACCTTGGAAAAGACAAATTTTGCGTGAAAAGGGGTGAT 197329 Query 31958 AGGGTAGCTCAACTAATTTGCGAAAAAATAG 31988 | ||||||| || || ||||||||||||| Sbjct 197330 CGCATAGCTCAGCTTATCTGCGAAAAAATAG 197360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427040840545439