Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq21 91.5 2e-13 >seq21 Length=749496 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 |||||||| || ||||| ||||| || ||||| ||||| || || | ||| || ||| Sbjct 54991 TGAAATTCGCCGGACAAAACTCTCCGTGTGTATATATTTGAAGTGTACGCTTCGACCGAT 55050 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCAC 77236 || ||||| ||||||||||| ||||| || ||||| ||||| || || || Sbjct 55051 TCGTTGTTGCCCAAAATTTGGGCAGTGGATGCAGTCGGCATGGGAGCAAC 55100 Score = 87.8 bits (96), Expect = 2e-12 Identities = 192/286 (67%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 77268 ATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCG 77327 ||||| ||||| || | ||| ||||| ||||| | |||| | |||| | ||| Sbjct 55188 ATTTTTTCTTTCAGTTCGGCCCAGTCCCACAGATCAGTAGGTGTGATGCCCCACATATCA 55247 Query 77328 TATTGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTT 77387 || || | || || || ||| | |||||| | || || |||| ||||| Sbjct 55248 TACTGCAATATCCCTTTGCTAACGGGTGATCCCTCGTACGTCGCATAGGGTCCCAAGTCC 55307 Query 77388 TCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTA 77447 | || | || || |||||||||||||| | | ||||| ||||||||||| | | Sbjct 55308 TTGGCCAACTCGCAGCTCGCTTCCAATGCGGCATGGTAAATGGTTTCGAAAATATGACGA 55367 Query 77448 TTGAGATCTTG--TGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTG 77505 ||||| |||| |||||| | || |||||||| | | | |||||| || || | Sbjct 55368 TTGAG--CTTGAATGCTTCTGCAGACTCGAACGGATAGCGCATTAAAATAAAAGCGTCCG 55425 Query 77506 CTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 77551 | | ||||| |||||||| || || || | ||||| | ||||||| Sbjct 55426 CGAGCCCCTGCACTCCAATGCCTATGGGACGATGTCGCATATTGGA 55471 Score = 86.0 bits (94), Expect = 9e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 78282 CCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCC 78341 || |||||||| || |||| || |||| ||||| ||| | |||||||||||||||| Sbjct 58004 CCAATTCCTCCGGCGTTCTTCGAAATTACGGCGCATTCTTTAAGTGTATCGTAGATACCC 58063 Query 78342 TCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 78401 || || ||||| | |||| ||| ||||| || || | || | | |||| Sbjct 58064 TCGATGCTGTCCGACTTCATCGTAATCAGAAAGCAACTGCTAAGCTGCGGCTTGCAAGTT 58123 Query 78402 CCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA 78448 ||||||||||| | || || || || || || ||||||||||| || Sbjct 58124 CCTGCATTAAAGAGGGTAGGCGAGGCGTGAGTGAACCATTTTTCCGA 58170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694654185905120