Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq62 123 5e-23 seq38 95.1 3e-14 seq30 93.3 9e-14 seq55 86.0 1e-11 >seq62 Length=382019 Score = 123 bits (136), Expect = 5e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 |||||||| || ||||| || |||||| ||||| ||||| |||||||| || || | | Sbjct 282394 CCGGCAAAAATTAAACGCTGCTGGTCAGGAGGAATTCCCTCTTTGTCTTGTATTTTCGTT 282453 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || ||||||| |||||||| | || ||||| || || ||||| ||||| ||||| Sbjct 282454 TTCACATTATCGATTGTGTCCGACGGCTCCACTTCAAGGGTAATCGTTTTACCAGTCAAC 282513 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| || |||||||||||| Sbjct 282514 GTCTTCACAAATATCTGCATT 282534 Score = 123 bits (136), Expect = 5e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 282955 GTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCT 283014 |||| ||||| ||||| | ||| || |||||| ||||||||||| ||||||||||| | Sbjct 284365 GTTTACCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATACCCTCTTTGTCTTGGATTT 284424 Query 283015 TTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCG 283074 ||||||| || | || || ||||| || | ||| |||||||| || || || || || | Sbjct 284425 TTGCTTTCACATTCTCAATGGTGTCGGACGGTTCCACTTCGAGCGTAATAGTTTTTCCGG 284484 Query 283075 TCAAAGTCTTAACGAATATCTGCATT 283100 |||| ||||| || ||||| |||||| Sbjct 284485 TCAACGTCTTGACAAATATTTGCATT 284510 Score = 116 bits (128), Expect = 8e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 282953 TTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGAT 283012 ||| || || |||||||||| || |||||||| ||||||||||||||||| || || Sbjct 283227 TTGCTTACCAGCAAAGATCAGCCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAAT 283286 Query 283013 CTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACC 283072 ||| | || ||| | ||||| || || || | ||| |||||||| |||||||| || || Sbjct 283287 CTTCGTCTTCACGTTTTCGATCGTATCGGACGGTTCCACTTCGAGCGTGATCGTTTTCCC 283346 Query 283073 CGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| ||| || || || |||||||| Sbjct 283347 GGTCAGAGTTTTCACAAAAATCTGCAT 283373 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 |||||||| || |||||||| |||||| ||||| |||||||||||||| || || | Sbjct 283517 CCGGCAAAAATTAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGAATTTTCGTC 283576 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || || || ||||||| || ||||| || || || |||||||| ||||| Sbjct 283577 TTCACATTTTCAATGGTATCCGAAGGCTCCACTTCCAGTGTTATTGTCTTACCGGTCAAC 283636 Query 283080 GTCTTAACGAATATCTGCATT 283100 || || || || ||||||||| Sbjct 283637 GTTTTCACAAAGATCTGCATT 283657 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| || | ||| || || ||| ||| || || |||||||||||||| ||| Sbjct 284083 TTACCCGCAAAAATAAGACGCTGCTGATCAGGCGGGATGCCTTCCTTGTCTTGGATTTTT 284142 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 | || ||| | ||||| |||||||| | ||| ||||| || || || || || |||||| Sbjct 284143 GTCTTCACGTTTTCGATGGTGTCCGATGGTTCCACTTCTAGCGTTATTGTTTTGCCCGTC 284202 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 | ||| || || ||||| ||||| Sbjct 284203 AGAGTTTTGACAAATATTTGCAT 284225 Score = 100 bits (110), Expect = 6e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 |||||||| || || || || || || || || || ||||||||||| || || ||| Sbjct 282956 CCGGCAAAAATTAAGCGCTGCTGATCTGGTGGTATGCCTTCCTTGTCTTGAATTTTAGCT 283015 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | || || || || || | |||||| || | |||||||||||| || || ||| Sbjct 283016 TTCACGTTCTCAATCGTATCTGACGGTTCGACCTCCAAAGTGATCGTCTTCCCGGTTAAA 283075 Query 283080 GTCTTAACGAATATCTGCAT 283099 || || |||||||| ||||| Sbjct 283076 GTTTTGACGAATATTTGCAT 283095 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGT 283027 |||| || || ||||| |||||| || ||||||||||| || |||| | || ||| | Sbjct 285231 ATCAGGCGCTGCTGGTCGGGCGGAATGCCTTCCTTGTCTTGAAT-TTTGTTCTTCACGTT 285289 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || | |||||| | ||||||||||| |||||||| || ||||| | || || || Sbjct 285290 TTCAATCGAGTCCGACGGCTCGACTTCGAGCGTGATCGTTTTTCCCGTGAGTGTTTTCAC 285349 Query 283088 GAATATCTGCAT 283099 ||| |||||||| Sbjct 285350 GAAAATCTGCAT 285361 >seq38 Length=545037 Score = 95.1 bits (104), Expect = 3e-14 Identities = 160/228 (70%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 273780 GTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGA 273839 ||||||||||| || ||||| ||| ||||||||||| ||||| | | ||||||||| Sbjct 422444 GTGAAAATGTATCTTGCACTAGCAGCATCCTTGCCACCCTGCAGGCGAGTACCAAACTGG 422503 Query 273840 CCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACG 273899 || || | || | || || |||||||| || || | || || |||| ||| | Sbjct 422504 CCAATAGGTAACAGTAAATTGATATTGTTGCTGCCAACAAAGTCATGTGCCAAATTAATA 422563 Query 273900 ATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTG--TGTTCGGCGATATAAC 273957 ||||| ||| |||| | | || || |||||||| ||||| ||| || | ||| Sbjct 422564 ATAGTTCCCATAAGGCTTGCTTCCCCATGGTGATA--CGCTGACATTTCAGCAACGGAAC 422621 Query 273958 CACTGAACTGAGCAACCTTCAC--ATCGCTCGTCAAGTTTCGCTTGAA 274003 | ||||| || |||||||| ||||| |||| || |||||||| Sbjct 422622 CGGCCAACTGGGCTACCTTCACTTCTCGCTTGTCA--TTACGCTTGAA 422667 >seq30 Length=610381 Score = 93.3 bits (102), Expect = 9e-14 Identities = 197/292 (67%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 273780 GTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGA 273839 ||||| ||||| | ||||| || ||||||||| || ||| | | ||||| || Sbjct 127714 GTGAAGATGTAACGCGCACTAGCGGCGTCCTTGCCGCCCATCAGACGGGTGCCAAATTGG 127773 Query 273840 CCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACG 273899 || |||| ||| ||| ||||||||||| |||||| | | || |||| ||| || Sbjct 127774 CCGATCGGCATCAGCAGGTTAATGTTGTTGCTTCCGACGAAGTTGTGCGCCAAATTGACA 127833 Query 273900 ATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCA 273959 || || | ||| || |||||||| || || ||| ||||| || | || Sbjct 127834 ATCGTTGACATTAGGCTCACTTCGCCGTGATGGTATGCGGACATCTCGGCAATCGAGCCG 127893 Query 273960 CTGAACTGAGCAACCTTCACAT--CGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACA 274017 | ||| ||||||||||| | |||| |||| ||||||||||| || ||| || Sbjct 127894 GCCAGCTGGGCAACCTTCACTTCGCGCTTGTCA--TTTCGCTTGAAGCAGGTGAACAGCA 127951 Query 274018 CCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATACTGCGTTC 274069 |||||||||| ||||| || || || || | ||| || || || | ||| Sbjct 127952 CCTTCCGCTGTCCCGGCTTCAAACCGTCCACCAACGACGGTATGCTTCTTTC 128003 >seq55 Length=397027 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||||||| ||||| | || || | || || ||||| || | ||| ||| Sbjct 87312 ATACCCTCCTTGTCTTGAATCTTCGTCTTCACATTTTCAATCGTGTCAGATGGTTCCACT 87371 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| ||||| || || | || ||||| ||||||||||| Sbjct 87372 TCCAAAGTGATTGTCTTTCCGGTTAGCGTTTTAACAAATATCTGCAT 87418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046716628704682