Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq62 118 3e-21 >seq62 Length=382019 Score = 118 bits (130), Expect = 3e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||||||||| || || ||||||||||| ||||| |||||| || || Sbjct 283370 CAGATTTTTGTGAAAACTCTGACCGGGAAAACGATCACGCTCGAAGTGGAACCGTCCGAT 283311 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||||||||| || || || ||||||||||| || Sbjct 283310 ACGATCGAAAACGTGAAGACGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAACAG 283251 Query 178044 CGACTTATCTTCGCCGGAAAACA 178066 || || ||||| || || || || Sbjct 283250 CGGCTGATCTTTGCTGGTAAGCA 283228 Score = 107 bits (118), Expect = 5e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || |||||||| || || ||||| |||||| || ||| Sbjct 284506 CAAATATTTGTCAAGACGTTGACCGGAAAAACTATTACGCTCGAAGTGGAACCGTCCGAC 284447 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| ||| || || |||||||| || || || || |||||||| Sbjct 284446 ACCATTGAGAATGTGAAAGCAAAAATCCAAGACAAAGAGGGTATTCCACCTGACCAGCAG 284387 Query 178044 CGACTTATCTTCGCCGGAAAAC 178065 || || ||||||||||| |||| Sbjct 284386 CGTCTCATCTTCGCCGGTAAAC 284365 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || | || ||||||||||| || | ||||||||| || ||| Sbjct 285070 CAGATTTTCGTGAAGACGTTGACGGGAAAAACGATAACTTTGGAGGTGGAACCGTCGGAC 285011 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | |||||||| || || ||||||||||||||||| || || || |||||||| Sbjct 285010 ACGGTGGAGAACGTGAAGGCTAAAATTCAGGACAAAGAAGGCATACCGCCTGACCAGCAG 284951 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| ||||| || || Sbjct 284950 CGACTGATCTTTGCTGG 284934 Score = 104 bits (114), Expect = 6e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||||| || || ||||| || || || || |||||| || ||| Sbjct 284222 CAAATATTTGTCAAAACTCTGACGGGCAAAACAATAACGCTAGAAGTGGAACCATCGGAC 284163 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 |||||||| ||||| || |||||| || || ||||| ||||| ||||| || || ||||| Sbjct 284162 ACCATCGAAAACGTGAAGACAAAA-ATCCAAGACAAGGAAGGCATCCCGCCTGATCAGCA 284104 Query 178043 ACGACTTATCTTCGCCGGAAA 178063 || ||||| || || || || Sbjct 284103 GCGTCTTATTTTTGCGGGTAA 284083 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| ||||| |||||||||||||| ||||| || || || ||| Sbjct 285358 CAGATTTTCGTGAAAACACTCACGGGAAAAACGATCACGCTCGAAGTCGAGCCGTCGGAC 285299 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || ||||| || | || ||||| ||||| ||||| || || || |||||||| Sbjct 285298 TCGATTGAAAACGTGAAGAACAAAATTCAAGACAAGGAAGGCATTCCGCCCGACCAGCAG 285239 Query 178044 CGACTTATCTTCGCCGG 178060 || || || | ||| || Sbjct 285238 CGCCTGATTTACGCTGG 285222 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| ||||| |||||||| ||||| ||||| |||||| || ||| Sbjct 283940 CAAATATTTGTTAAAACGCTCACTGGAAAAACAATCACGCTCGAAGTGGAACCGTCCGAC 283881 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || ||||||||||| || ||||| ||||| || || Sbjct 283880 ACTATTGAAAATGTGAAAACTAAAATACAGGACAAAGAGGGCATCCCGCCGGATCAACAG 283821 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || || || || || Sbjct 283820 CGGTTAATATTTGCTGGTAA 283801 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||||||||| || ||||| || ||||| || || ||||| || || Sbjct 282812 CAAATATTTGTGAAAACTCTAACTGGAAAGACCATCACTCTGGAAGTGGAGCCTTCTGAT 282753 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| ||||| |||||||| |||||||| || ||||| || || ||||| Sbjct 282752 ACTATAGAGAATGTCAAGGCGAAGATTCAAGACAAAGAGGGTATCCCACCAGATCAGCAG 282693 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || || || || || Sbjct 282692 CGGTTGATTTTTGCTGGTAA 282673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203705243417502