Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq62 96.9 3e-15 >seq62 Length=382019 Score = 96.9 bits (106), Expect = 3e-15 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 41723 CCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGC 41782 || || || ||||| ||||| ||||| | || | || || |||||| ||| |||| || Sbjct 284934 CCAGCAAAGATCAGTCGCTGCTGGTCAGGCGGTATGCCTTCTTTGTCC-TGAATTTTAGC 284992 Query 41783 TTCAACGA-CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAG 41841 | ||| | ||| ||||| || |||||||||| ||||||||||| ||||||| Sbjct 284993 CTTCACGTTCTCCACCGTGTCCGACGGTTCCACCTCCAAAGTTATCGTTTTTCCCGTCAA 285052 Query 41842 CGTCTTTACGAAAATCTGCATG 41863 |||||| ||||||||||||||| Sbjct 285053 CGTCTTCACGAAAATCTGCATG 285074 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/149 (74%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 ||||| || || || ||||| ||||||||||||| |||| | |||||||||| ||| | Sbjct 283228 TGCTTACCAGCAAAGATCAGCCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCC-TGAAT 283286 Query 41777 TTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTAC 41834 || | |||| ||| | | || ||| || ||||| || | ||| |||||||| | Sbjct 283287 CTTCGTCTTC-ACGTTTTCGATCGTATCGGACGGTTCCACTTCGAGCGTGATCGTTTTCC 283345 Query 41835 CCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | ||||| || || || |||||||||||| Sbjct 283346 CGGTCAGAGTTTTCACAAAAATCTGCATG 283374 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| |||| || ||||||| ||| |||||||| || |||||||||||||| ||||| Sbjct 284511 CCGCCACGTAACCGCAACACCAAATGGAGCGTGCTTTCTTTCTGAATGTTATAATCGGAC 284570 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCC 41724 || ||||| |||| || || || ||||| Sbjct 284571 AGCGTGCGTCCGTCTTCCAGTTGTTTGCC 284599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462294274279600