Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_000899.1 Length=45063 Score E Sequences producing significant alignments: (Bits) Value seq22 82.4 2e-11 >seq22 Length=1093107 Score = 82.4 bits (90), Expect = 2e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 1048 TACGGGCGCATAGCCCCTCGTTCGGGCTTGGCCGTAAAGTTTTTTATCGATGTGGGAGCC 1107 ||||| || | ||||| ||||| ||| | || || ||| | ||||| ||||||||| Sbjct 787329 TACGGACGTGTTGCCCCGCGTTCAGGCCTTGCAGTTAAGCACTGCATCGACGTGGGAGCC 787388 Query 1108 GGTGTTATCGATAGCGATTACCGGGGCATCGTTAGCGTCCTCCTTTTCAATTTTTCGGAC 1167 || || ||||| | || ||| | |||| ||| | || | || ||||||||| | Sbjct 787389 GGCGTGATCGACGGAGACTACAGAGGCAATGTTGGAGTAGTACTGTTCAATTTTGGAAAA 787448 Query 1168 CACAATTTCAACGTCCGTCGGGGCGATCGCATAGCTCA 1205 | || |||| ||| | ||||||||||||||||||| Sbjct 787449 GAGAAGTTCAGCGTACACAGGGGCGATCGCATAGCTCA 787486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144079476449300