Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq20 96.9 4e-15 >seq20 Length=1136993 Score = 96.9 bits (106), Expect = 4e-15 Identities = 238/360 (66%), Gaps = 2/360 (1%) Strand=Plus/Minus Query 16975 GCAATG--TAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATC 17032 |||||| || | |||| |||| | ||| || || || ||| || | || ||||| Sbjct 122972 GCAATGAATAGTACCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGACCTGGCATA 122913 Query 17033 TTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCG 17092 || |||||||||| ||| || |||| ||||| || ||||||||||| || || Sbjct 122912 AGACCACGTTTCTTTAGCCAGAAGATCGAAGCGAAACTGCCCGAAAAGAATATGCCTTCA 122853 Query 17093 ACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTC 17152 |||| ||||| || | || ||| || | | | | | |||| |||||| Sbjct 122852 ACGGCGGCAAATGCTACTAGTCGATCACTGAATGGTGACTTCTTGTCCGCGATCCATCGT 122793 Query 17153 TGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTC 17212 | |||| ||||| || | ||| | ||| || || || || || || || | Sbjct 122792 AGAGCCCAATCGGCCTTCTTCTTAACGCACGGAATGGTCTCGATAGCGTTGAACAGGCGG 122733 Query 17213 TCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGT 17272 | ||| | ||| || ||||| || || || ||||| |||||||| ||||| Sbjct 122732 TAACGCTCCGCTTCGTCTTGAATGTACGTGTCAATCAGGAGGCTATACATTTCCGAGTGA 122673 Query 17273 ATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332 |||||||| |||||||| || || ||||||||||| || || || | | |||| |||| Sbjct 122672 ATGTTCTCTATGGCTATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCC 122613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517543620388080