Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq20 111 2e-19 >seq20 Length=1136993 Score = 111 bits (122), Expect = 2e-19 Identities = 238/351 (68%), Gaps = 16/351 (5%) Strand=Plus/Minus Query 16213 GCAATG--TAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATT 16270 |||||| |||| | || |||| | ||| || || ||| |||||| | |||||||| Sbjct 122972 GCAATGAATAGTACCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGACCTGGCATA 122913 Query 16271 TTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCA 16330 || |||||||||| |||||| |||| ||| || |||||||||||||| || ||| Sbjct 122912 AGACCACGTTTCTTTAGCCAGAAGATCGAAGCGAAACTGCCCGAAAAGAATATGCCTTCA 122853 Query 16331 ACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CATCTTTATTACGAATCCATTT 16389 || | ||||| || | || ||| || | | | | | |||| ||| ||||| Sbjct 122852 ACGGCGGCAAATGCTACTAGTCGATCACTGAATGGTGACTTCTTGTCCGCGA-TCCATCG 122794 Query 16390 CTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA---- 16445 | |||| ||||| || | || | || || || || || || || |||| Sbjct 122793 TAGAGCCCAATCGGCCTTCTTCTTAACGCACGGAATGGTCTCGATAGCGTTGAACAGGCG 122734 Query 16446 --ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTC 16503 | ||| ||| | | || || ||||| |||||||| | || |||||||| Sbjct 122733 GTAACGCTCCGCTTCGTC----TTGA--ATGTACGTGTCAATCAGGAGGCTATACATTTC 122680 Query 16504 TGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554 ||||| ||||||||||||||||| || || || || ||||| |||||||| Sbjct 122679 CGAGTGAATGTTCTCTATGGCTATTTGGAAGCCGTAAAAGCAGCGAGCCTC 122629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511412443839920