Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq20 143 3e-29 seq5 87.8 2e-12 >seq20 Length=1136993 Score = 143 bits (158), Expect = 3e-29 Identities = 238/343 (69%), Gaps = 7/343 (2%) Strand=Plus/Minus Query 24177 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 24236 || ||| ||| ||||| || ||||| || ||||| || || ||||| || || || || Sbjct 122939 TCATTGCTAAAAGTGAGACCTGGCATAAGACCACGTTTCTTTAGCCAGAAGATCGAAGCG 122880 Query 24237 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA 24296 || || |||||||| || ||||| || || ||||| || | |||| || | | | Sbjct 122879 AAACTGCCCGAAAAGAATATGCCTTCAACGGCGGCAAATGCTACTAGTCGATCAC--TGA 122822 Query 24297 CCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 24351 || | || ||| ||||| | ||||||||||||||||||| || || || | Sbjct 122821 ATGGTGACTTCTTGTCCGCGATCCATCGTAGAGCCCAATCGGCCTTCTTCTTAACGCACG 122762 Query 24352 GCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTAT 24411 | || ||||| ||||| || || || || || |||| || || || | Sbjct 122761 GAATGGTCTCGATAGCGTTGAACAGGCGGTAACGCTCCGCTTCGTCTTGAATGTACGTGT 122702 Query 24412 CAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGA 24471 |||||| || |||||||||||||| |||||||| || ||||| ||||| || ||||| | Sbjct 122701 CAATCAGGAGGCTATACATTTCCGAGTGAATGTTCTCTATGGCTATTTGGAAGCCGTAAA 122642 Query 24472 AACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 | || | |||||| || | ||| | ||| | |||| ||||| Sbjct 122641 AGCAGCGAGCCTCTGTCACCTGAATTTCCTGAGAAAAGCGTTC 122599 >seq5 Length=2343098 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||||||||||||| || |||||| ||| |||||| || || | || | Sbjct 1062951 TCCACCCGTAAAAATGCATAGAAGTAAGTTTGCCATAGTTCGGATGAGCCATGTATATGT 1062892 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||||| ||||| ||||||||||| | || |||||||| | ||||| || Sbjct 1062891 TAAGGGATTGCGACTGATCAATGAAGGCTCCACGATCCGCAGCCATATCGATGATTACCT 1062832 Query 52995 TTTGTGGAATTTCCCAAA 53012 | || ||||||||||||| Sbjct 1062831 TCTGCGGAATTTCCCAAA 1062814 Score = 82.4 bits (90), Expect = 9e-11 Identities = 144/208 (69%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 54269 ATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATCCCCCCTGCCATTT 54326 |||||||| || |||| |||||| | | |||| | || || || || || ||| Sbjct 1057377 ATATAGCTCCCGGTGGCTCGAATAGAATGGACGTTGA--GCCCAATTCCTCCGGCATTTT 1057320 Query 54327 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 54386 | || || | ||||| ||| | |||||| ||||| ||||| || || || | ||| Sbjct 1057319 TTGAAATGATCGCGCACTCTTTGAGCGTATCGTAGATTCCCTCAATGCTGTCCGCTTTCA 1057260 Query 54387 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 54446 | | |||||||| || ||| || || | | |||||| | ||||| | ||||| Sbjct 1057259 TTGTGAGTAGAAAGCAACTACTCAGCTGTGGTTTGCAAGTTCCAGAGTTAAAAAGGGTAG 1057200 Query 54447 GAGAAGCGTGCGTAAACCATTTTTCAGA 54474 | || ||||| |||||||||||||| || Sbjct 1057199 GCGAGGCGTGGGTAAACCATTTTTCTGA 1057172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719329014880