Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq20 239 5e-58 >seq20 Length=1136993 Score = 239 bits (264), Expect = 5e-58 Identities = 274/366 (75%), Gaps = 2/366 (1%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| || || || ||||||| | |||||| | ||||| || ||||| |||||||| || Sbjct 122595 GGTTGAACGCTTTTCTCAGGAAATTCAGGTGACAGAGGCTCGCTGCTTTTACGGCTTCCA 122654 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCG 116922 || ||||| |||||| | ||||||||||||||| ||| || ||||||||| | | Sbjct 122655 AATAGCCATAGAGAACATTCACTCGGAAATGTATAGCCTCCTGATTGACACGTACATTCA 122714 Query 116923 CTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGA 116982 | |||| ||| |||| ||||| |||||||| || |||||||| || | Sbjct 122715 AGACGAAGCGGAGCGTTACCGCCTGTTCAACGCTATCGAGACCATTCCGTGCGTTAAGAA 122774 Query 116983 GAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC-TTCGGCGAGCGCC 117041 ||||||||| ||||| || || |||||||| | || ||| | | || ||| | || || | Sbjct 122775 GAAGGCCGATTGGGCTCTACGATGGATCGCGGACA-AGAAGTCACCATTCAGTGATCGAC 122833 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || || || || ||||| || ||| | |||||||||||||||||||| | || || | Sbjct 122834 TAGTAGCATTTGCCGCCGTTGAAGGCATATTCTTTTCGGGCAGTTTCGCTTCGATCTTCT 122893 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| |||||||| || || ||||| || || ||||| ||||| |||||||||||| | | Sbjct 122894 GGCTAAAGAAACGTGGTCTTATGCCAGGTCTCACTTTTAGCAATGAGCTCATCTCCCGAG 122953 Query 117162 ACGAGG 117167 | |||| Sbjct 122954 ATGAGG 122959 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 116624 CAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAG 116683 ||||| |||||||| ||| || |||||||| ||||| || || || |||||||||||| Sbjct 122359 CAATATCCGGACATTTGGAGCTACTACAAAAAAGCCGAAGCTTCATTTTGGACCGTCGAG 122418 Query 116684 GAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||| |||||| || |||| || ||| ||||| ||||| ||||| || Sbjct 122419 GAGGTTGACCTGAGCAGAGACATGACCGATTGGGAAAAGCTGAACCCGAACGAAAAACAC 122478 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGT 116790 |||||| | |||| || || || ||||| || |||||| || || Sbjct 122479 TTCATCTCGTACGTACTCGCTTTCTTCGCGGCTTCCGACGGAATAGT 122525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217229286560