Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq24 100 2e-16 >seq24 Length=829597 Score = 100 bits (110), Expect = 2e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 118594 GTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTT 118653 |||| || ||| |||| || |||||||| || || || || |||||||||||| ||||| Sbjct 294058 GTTTACCGGCGAAGATAAGCCGCTGCTGGTCCGGCGGAATACCCTCCTTGTCTTGAATTT 293999 Query 118654 TTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGG 118713 | |||||| | || | |||||||| ||| || |||| ||| | || ||||| | Sbjct 293998 TAGTTTTAACATTCTCAATGGTGTCCGACGGCTCTACTTCGAGGGTAATGGTCTTGCCTG 293939 Query 118714 TCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| |||||||| ||||| Sbjct 293938 TCAATGTTTTGACAAAAATTTGCAT 293914 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 |||| || ||||||||||| ||||| || || ||||| ||| ||| ||| || || | Sbjct 293760 AGATTAGTCGCTGCTGATCTGGAGGGATCCCTTCCTTATCTTGAATCTTTGTCTTCACGT 293701 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 || | |||||| | ||| || || | || | |||||||||||||| ||||| | Sbjct 293700 TATCAATGGTGTCGGACGGCTCAACTTCCAGCGTTATAGTTTTGCCGGTCAGCGTTTTCA 293641 Query 118726 CAAAAATCTGCATG 118739 |||| ||||||||| Sbjct 293640 CAAATATCTGCATG 293627 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 || ||| |||| |||||||||||||| || || ||||| || || ||| |||||| | Sbjct 293191 CCTGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCTTCTTTATCTTGAATTTTATTC 293132 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | ||| | | ||| | ||| || |||| || | ||||| || || || Sbjct 293131 TTCACATTTTCAATCGAGTCGGACGGCTCAACTTCGAGCGTAATGGTTTTTCCCGTGAGT 293072 Query 118719 GTTTTTACAAAAATCTGCATGGCTT 118743 ||||| || ||||||||||| |||| Sbjct 293071 GTTTTCACGAAAATCTGCATTGCTT 293047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828782083752