Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq19 96.9 6e-15 >seq19 Length=1155537 Score = 96.9 bits (106), Expect = 6e-15 Identities = 229/343 (67%), Gaps = 5/343 (1%) Strand=Plus/Plus Query 135595 TATACAGATAAAGACGAGTGGACTACGTGGaaaaaaaTACCCGATCCTGTTTTGCATATA 135654 |||| ||||| ||||| |||| | |||||| || |||||| ||| | || ||| Sbjct 945072 TATAGAGATAGTGACGAATGGAATTGTTGGAAAGGTATTGGCGATCCCGTTATTCACATA 945131 Query 135655 GAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACGTTAGCA 135714 || ||| | ||||||| || | | | | | |||||||| || || | || ||| Sbjct 945132 GAGCTTCGTCGATGGGCAGACGCTATGGTACTGGCGCCCTTGGACGCCAACAGCTTGGCA 945191 Query 135715 AAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGATACA 135774 || || || || || | ||||| || | || || | |||| | || ||||||| Sbjct 945192 AAGATTGCAAACGGGTTGTGCGACAACCTGCTAACATGCGTTGTTCGGGCGTGGGATAGC 945251 Query 135775 AACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTATGTGGGAACATCCTA-TTAC 135833 | |||||||| || |||||||||||||| ||| |||| |||| | || | ||| Sbjct 945252 AGTAAACCACTGTACTTTTGTCCTGCAATGAACACTTACATGT-GGAATAGCCCACTTAT 945310 Query 135834 AGAAAAACATATAGATACGTTAAAA---TATATGGGTTTCATAGAAATAGAATGCATAGa 135890 | ||||| || || ||| | ||| | | ||||| ||||| |||||||| Sbjct 945311 GTACAAACAAATGGACACGCTGAAAACTCTTCTTGGTTTTCGCGAAATTCCCTGCATAGA 945370 Query 135891 aaaaaaaCTAGCATGTGGAGACGTAGGAAATGGTGCTATGGCA 135933 |||||||| || || |||||| || ||| || |||||| Sbjct 945371 GAAAAAACTTGCTTGCGGAGACAATGGCCTTGGAGCGATGGCA 945413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923193268772240