Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq20 87.8 2e-12 >seq20 Length=1136993 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||||||||| | || | |||| |||||||| || || ||||| | || || || Sbjct 123323 TTTTGATATTCGCCCACCTTTCTTTCGAAGAAATTGGTCTTACCTTCAAGCGATATCATT 123264 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTAT-TTATCGCATCCCAATTCCAACAA 16062 |||||||| || || ||||| | ||| || ||| || | ||| ||||||| | ||| Sbjct 123263 TCCATAAAGTCGAACGGATTCTCAGAATTGTA-TATCTTGTTGCAGTCCAATTCAACCAA 123205 Query 16063 TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122 ||| | ||| ||||| | ||||| || | ||| | || || ||||| || || || Sbjct 123204 TAAACGATCGGCCACGTACTCTATGTATCGGCACATCAGTTCGCAATTCATGCCGATCAA 123145 Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAA 16149 || || || | |||||| || | ||| Sbjct 123144 GTTGACCGGAAGTGCTTCGGTCAGAAA 123118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462510230891600