Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq24 87.8 1e-12 >seq24 Length=829597 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 45192 GTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTT 45251 |||| |||||||| || | |||||| ||||| || || | |||||||||||| ||||| Sbjct 294058 GTTTACCGGCGAAGATAAGCCGCTGCTGGTCCGGCGGAATACCCTCCTTGTCTTGAATTT 293999 Query 45252 TTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311 | ||||| | | | | ||||| ||| || || | |||||| |||||||| | Sbjct 293998 TAGTTTTAACATTCTCAATGGTGTCCGACGGCTCTACTTCGAGGGTAATGGTCTTGCCTG 293939 Query 45312 TCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 ||| || || ||||| |||||||| ||||| Sbjct 293938 TCAATGTTTTGACAAAAATTTGCATTCCGCCTC 293906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395073726616426